Input parameters:

  Query = F21A3.4 (Len=239)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F21A3.4, Len=239):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIKVIREKLTLTTSITSESVAEYEHDVDECCRLLEHKLELEMEKKLQLSNRIDVVQSQVTELWDRVDKARRRESDISCR 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 VTAWAQHLSEMMNEVKLKKAKMGTTMEISATLSAEIQESLDLLAEKRVIVQRMREEIDYRRHLHKQQLKDLKLDCDREEE 160 
WD40-rpts      _____________________________________WD 1_______________________________________

Query      161 KCEYWNDKSAEIEKVVEMLKEQRKSLGERVEEEKRMEQEQKKMLEELEMLLKKTGKKRQILDENANLVASFSSLTEESS 239 
WD40-rpts      _____________________________________________________________________________) 

1 WD40-repeats found in QUERY=F21A3.4 (Len=239):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-238      4.08  283.31  0.00943        7.5%     10.38

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-238    MDIKVIREKLTLTTSITSESVAEYEHDVDECCRLLEHKLELEMEKKLQLSNRIDVVQSQVTELWDRVDKARRRESDISCRVTAWAQHLSEMMNEVKLKKAKMGTTMEISATLSAEIQESLDLLAEKRVIVQRMREEIDYRRHLHKQQLKDLKLDCDREEEKCEYWNDKSAEIEKVVEMLKEQRKSLGERVEEEKRMEQEQKKMLEELEMLLKKTGKKRQILDENANLVASFSSLTEES

   WD40 Template    TG--------ECLRTLSG-------HT-----------------------SGV---------------------TSVS-----------------------FSPDGKRLVSG-----------------------------------------SED---------------------------------------------------------------------------GTIKVWD