Input parameters:

  Query = F20G4.1 (Len=1615)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F20G4.1, Len=1615):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAHMRGTNHEKEKHDDENSKILLKERYNLLKWLTNVEMRSPNVLIPVQIANYVESLPFCKLAVSPKCDRVAVMSYARQLD 80  
WD40-rpts                                                                                      

Query       81 IYQISGEILTHESSVQVLEETSPEYCILQFSSSSTLILSSRSTPHIDVFDSMGAYLYDIPLELHEGIFDVNSAICGMQTF 160 
WD40-rpts         (_____________________WD 1____________________)                              

Query      161 ENYSSSSNDKFIEILYVLQYSGVFSAFKIGRLSKYVKMWTVQLDIGQTGSFTVLPQYNLLLVASHHKESTSLVPPAGLCS 240 
WD40-rpts                                                                                      

Query      241 FRMMDMDPFVEPIRISTPDGGFFSRLPFSTSFMSYLPRMSLSFDSQLLVSVSTSGSLYLFEIPSLHVKFSFNFISGPRPV 320 
WD40-rpts                       (___________________WD 2___________________)                   

Query      321 DACFVDSDEIAVIYDNGYLLRCSLEDLEEKMYSVKMRSKKEIDEEPELKDFYSEQTVMVSPAQREIFLLTADGDNSFLRK 400 
WD40-rpts                                                                                      

Query      401 AAHKRVQLAGQLWFYTVWNSLKKLVGMAMGEPAEQLHFETHIAKFEFSLIHSPTRTLQELFDRTLKEHDYTRARELAETY 480 
WD40-rpts                                                                                      

Query      481 DTIDIYVVLKSEWIDKCSKNKVTVEDVEDILKRIGDSEWAAEQCASADSDDFEVHKALIDLGLSLGESSVTWQIRLLHHW 560 
WD40-rpts                                                                                      

Query      561 RMLEVCRIKGDVDIYMMARNGSCLDAALTFAHNGDIDSLTRIIESNMAVMKHHQKRILSAIPTCTSPTKYEILMPKREDG 640 
WD40-rpts                                                                                      

Query      641 ETEEQWELEEQNDGIYERLDKILMEHPDAESLIRSINVGNIPNEETFDFTSWVRETLPKIDFECGMTDICVNLLQIAYER 720 
WD40-rpts                                                                                      

Query      721 GYEDLIHDLATWQPYAQYIRICSSVSESITSFQDSTMKSFTDRFSRLLDSELIKNAKDIVSLIEWKIKMTSSDSEESIED 800 
WD40-rpts                                                                                      

Query      801 RLRDAVTTLMKATNERTTKVLVAFRNELPSVVDDHVILEVLLNMTSTGADLMKSLGDLPVDKYVNVTSSLGSLMSRGVKM 880 
WD40-rpts                                                                                      

Query      881 TFKSIFESMKEPDGARRVLIKLSRSGNCSNFDDWMSLRDDIYDMANGIYEDLVTTEEALEIFAGEILEEERIGSHPELME 960 
WD40-rpts                                                                                      

Query      961 LVLTLNPKEDNSNPRKLSIAKSADVLLSKSDELMNEATQRGDPLLGRSRFFAVAARPISPKKSKEKLDWLDAIDAALELG 1040
WD40-rpts                                                                                      

Query     1041 CTMMPIAIKFCEHDSLLRDVVGLGSNYKQGKKILSFAKQLNIDTPIATALSYCALAALNANDAVYLSKYIGEVMKAKGVP 1120
WD40-rpts                                                                                      

Query     1121 VVHKLCMQIMNSSHVPTDMEDVYSCAVLNSSEENLLDTVDAIASSEKRLSESRRCREIRLDDIPVSEAVVGDPMYTPMRL 1200
WD40-rpts                                                                                      

Query     1201 YNARKEISGDVKQKITFYGKRNLWETNYGKREGFDVMKRLYAHESSTVALCFSLFEPAENVETGELSWTKNDKLRRYERG 1280
WD40-rpts                                                                                      

Query     1281 LRFFQDRVPLSDLVTAPASAIINEANKGDASITAIDRIEDYGCDRRRFIGDAEYRTETIIGLAGTENEQIFADALELAEK 1360
WD40-rpts                                                                                      

Query     1361 YEIDEWKLHMASLEYLLDPSYNVPIIDVKQIMKSRKHLSKLRTKLDEFHSRLRSMVLPSLETNEQFLSYISLFADAEPEK 1440
WD40-rpts                                                                                      

Query     1441 KLGDTIKKIISKMKNVEAIRLWTDAKYLSSTLNKIPDGNLRAIISSVLQFPKIGVKACEMSAEFLLEGDDTRPPSNPFTL 1520
WD40-rpts                                                                                      

Query     1521 FLLMRSNIEDFLELVANKKSRDDEIAYLDQAVILLENTPKVPPLLLDAIKMRSEKMHRATVTPEPATPSNGSSTGLSSYF 1600
WD40-rpts                                                                                      

Query     1601 SNTEDNSGMMKRRKN 1615
WD40-rpts                     

2 WD40-repeats found in QUERY=F20G4.1 (Len=1615):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    84-130      4.05  281.89  0.00985       17.5%     29.96
  WD 2:  Seg 13   258-301      3.59  263.15  0.01756       22.5%     36.07

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   84-130    ISGEILTHESSVQ-----VLEETSPEYCILQFSSSSTLILSSRSTPHIDVFD
   WD 2  258-301    -PDGGFFSRLPFSTSFMSYL-------PRMSLSFDSQLLVSVSTSGSLYLFE

   WD40 Template    TGECLRTLSGHTS-----GV-------TSVSFSPDGKRLVSGSEDGTIKVWD