Input parameters:

  Query = F18C5.10 (Len=292)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F18C5.10, Len=292):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAFSPLAATNEKNRPIDVIWSHEDDEEEQTIPVVKNQGFVAKVFNSRNTQHAKLIVLAVLALVHFYYLNDFLVKFAAVD 80  
WD40-rpts                                                                                      

Query       81 QMAQDARYIKPSGINHRMDMASVRYTFQGFIDYKKNLWMTVGAMCASLATTASLLTIYSSPRDVFNRAAMAVIRVFDLCA 160 
WD40-rpts                                                        (_____________________________

Query      161 FMFISFLLFARISSAVIINHTTQHSLRAASRISVNLVNDLGNSLSCTVEPRGELPICSRQIIDSIFPVQVIEYLIILCIL 240 
WD40-rpts      _________________________________________________WD 1___________________________

Query      241 TGAYIGLAYLIEWCIRHFFPPTHEKLTPISAISRNLLVSSRCSSDNSVLIAA 292 
WD40-rpts      ___________________________________________________)

1 WD40-repeats found in QUERY=F18C5.10 (Len=292):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   131-292      3.00  238.64  0.03721       22.5%     15.55

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  131-292    TASLLTIYSSPRDVFNRAAMAVIRVFDLCAFMFISFLLFARISSAVIINHTTQHSLRAASRISVNLVNDLGNSLSCTVEPRGELPICSRQIIDSIFPVQVIEYLIILCILTGAYIGLAYLIEWCIRHFFPPTHEKLTPISAISRNLLVSSRCSSDNSVLIAA

   WD40 Template    TGECLRTLSGHT------------------------------------SGVTS--------------------------------V--------SF---------------------------------SPDGKRLVS-------------GSEDGTIKVWD