Input parameters:

  Query = F14B6.2 (Len=720)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F14B6.2, Len=720):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSTSSSVLPTTPIGKQQVIDLKAGAILRENARKSVLFFGCPLSVVLVLIVLIKCLCISFWIIREHETFDFRCAAWNGGQ 80  
WD40-rpts                                                                                      

Query       81 PTDYMYRAKRSIAFEKSDPRKFSKIPDDDDDDNSKTDVINKKDKKKKPLYGRSTSPANDIISDAPKIDPRLDFGPLPPNF 160 
WD40-rpts                                                                                      

Query      161 QRKIDSNHIPAVPPYEPDDDLPMTTMVTLTNTQIVQLSGEETGVVKMKTIRNRVEKVGSDEEQFIEIDIANAPRIYVSKI 240 
WD40-rpts                                   (_____________________WD 1_____________________)   

Query      241 KSRHGGEEEEHFDLLKELKKDEEEKEKKKEKKKKGKGLKKAKKLTEAEKLLNNSTSTSVIPDTAVSRKPKGKGLKKSKKL 320 
WD40-rpts                                                                                      

Query      321 NQKPKSDEEVTKQPRHLVGKSSSLSPTTPRPKSSWMNGVLDPQDPNFSNQGQIRGYPMQKASRKPSATTASPSEKDEDEE 400 
WD40-rpts                                                                                      

Query      401 KLKLSESTRMMWDMDELKYTTFLAPKTTEQTKQVEEGVKEVIQEAHERSQKPMLKETFEEATTSTEKPLPGGMSKDQWEK 480 
WD40-rpts                                                                                      

Query      481 KKEAFEAYTPPISLSDLQPSHSSHSGPAQAPQHIHFESASSTPSTPPAFHFIPPSSEAPYYVEINDADTETVYVSSVTPM 560 
WD40-rpts                                                                                      

Query      561 YRPVFENMGHLESTTKSYDPLHLEMEIAKLKESSTCLARMAFDVWCLFVLFSTVPFIMGICVPRWSLFVLHIVFDFLFLV 640 
WD40-rpts                                                                                      

Query      641 VGFVTSLTIAIMSSIMYFLIDEMTSDSLFEFLLVAFVIDIVLILYAIVVGIAYRCCCRLVDNSIKETSINYSVSSNGEAV 720 
WD40-rpts                                                                                      

1 WD40-repeats found in QUERY=F14B6.2 (Len=720):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   190-237      3.12  243.44  0.03215       17.5%     38.92

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  190-237    TNTQIVQLSGEETGVVKMKTIRNRVEKVGSDEEQFIEIDIANAPRIYV

   WD40 Template    TGECLRTLSGHTSGVTSVS--------FSPDGKRLVSGSEDGTIKVWD