Accession: F11C1.5d - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = F11C1.5d (Len=1818)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F11C1.5d, Len=1818):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MITRVSLLRLQHARKVLTTTASTSSKPSTLTIGSVSVQLQDAKNPDFVPAFYGQKNNPPQDLLPHLRWLIQKDKLKQDVF 80  
WD40-rpts                                                                                      

Query       81 LLGVPGKIRLELVLRYLEATNREFEYLPITRDTTEADIKQRREIRDGTAYYTDLCAVRAALKGRVLVIDGVERAERNVLP 160 
WD40-rpts                                                                                      

Query      161 ILNNLLENREMQLDDGRFLMKHDKYDELKVKYDEATLKKMGMERVSENFHVIALGLPVPRFPGNSLDPPFRSRFQCRNIQ 240 
WD40-rpts                                                                                      

Query      241 ELSFHTFLEQAKLIAPNVSETNLNDLISVVYAYNSEASTSRPRIGTAVVENTLKIWNENPSYSAGEIVNFSYPAKEVLSD 320 
WD40-rpts                                                                                      

Query      321 SEKDLINTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPTSFASTWIPTAKQENLIADLALAFSKGD 400 
WD40-rpts                                                                                      

Query      401 FILIGPKGSGKSRILGELSRRLNFNYVTMVLHQDMNTRELIQRRHMKENGDTVWEDSILVTAARNGDVCVLDGVEMVHSS 480 
WD40-rpts                                                                                      

Query      481 VIMSLSQLIYHRRFDLPNGNRLVGEKEFLTIMERDGVDEATMNERGVFQIPDSFRVLFVGESQSKEHKWINENVLSILPF 560 
WD40-rpts                                                                                      

Query      561 YTVPNLSLSEQMSIISEITHGSNTESVDKLIKFVQTIKNSNDAGLKNTATSLSLRRLIHIAKRDLMQPGHLRELVEKAAL 640 
WD40-rpts                                                                                      

Query      641 SKFLPQITKETFEHELNTANVFNDTTIRTKENEKFLDMIRANTIKAEDEALIPNVLFHHNKQHDEILEDMARDMKLGSHL 720 
WD40-rpts                                                                                      

Query      721 LLIGNQGVGKNKLTDRFLHLINRPRQYMQLHRDTTVQTLTMQTVVENGIIRHEDSALVKAARSGQILVIDEADKAPLHVI 800 
WD40-rpts                                                                                      

Query      801 AILKSLLDTGTLVLGDGRTLRPASSFTEADKTNDRIVPIHPNFRIIMLANRPGFPFLGNNLFAVLGDLFAIHMIDHPGRD 880 
WD40-rpts                                                                                      

Query      881 SELAMIKKFGPTVPVKTLNQLLTIFNELREKTDQGLLQYPYSTRELVNIVRHCNEFPTDPLPEVCRNVFDFDSYSEDTIA 960 
WD40-rpts                                                                                      

Query      961 TIHEVFQKHGVPLGVIRTGESLSIMERIPLGEMKTIGKWSRQKVEFPKSYGFKTPVAVEIERPEKMEFGLRKLDKQSNRN 1040
WD40-rpts                                                                                      

Query     1041 NVFSELHCVWKLPTDESNIISDGIRINDDLLVASVNPPRLYHCKDFMDTESNKIYFFRTHISDFQVDEINIHKIIPRFRA 1120
WD40-rpts                                                                                      

Query     1121 INKPRIRLAYLGGDNVLLHEEEANFTAIISLPDKMAAVVTKQTSLGETLGAMFTGSNYSWRLSNQQSNHALLYECGGREM 1200
WD40-rpts                                                                                      

Query     1201 LVYTDEKHGVTVQNGTVPFNIKRVFASAPQQWTVVSMENENYLLKVELGNFTLEKIDNDLEGGLDTVATKLDKNAMTLVA 1280
WD40-rpts                                                                                      

Query     1281 EPYYFVQGNHSGSVSGVLRKKSENTFHKRPYSFTDDRIAANDVSRENAFLGSTLVRAVPGFMTPTECVEEKIRPFDCIGF 1360
WD40-rpts                                                                                      

Query     1361 LETIDTERKKICYVPVPHSGNISLYQDWVASITKSAFHIVPWDNDKVLTVDSSGSIRSFELRMSTLEKSFDDWKRMTGGA 1440
WD40-rpts                                                                                      

Query     1441 DDEKLRMEFDRKPDDVDFNKLDEPKLGKIDPNNAPHHGGNQWMGGTGGYNTAGLGGIGGPFRLDAGHDVHQMPDFAKQQV 1520
WD40-rpts                                                                                      

Query     1521 PKHILKKAREIAKVEYAKKLREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKEREWTKHQTSGDLDDGKLIEG 1600
WD40-rpts                                                                                      

Query     1601 VTGEQNIYRRRIDKVPDPGAPQTKPKRLKVCLDVSGSMYRFNGYDQRLVKSLEAALMTMTALDGKTDKVQYDIIGHSGDS 1680
WD40-rpts                                                                    (_________________

Query     1681 PCVSFVKTDHHPKNNKERLDTLKRMIAHTQYCVSGDNTVESLQFAIKELAAKKDDFDETVVILVSDANLERYGIQPKELK 1760
WD40-rpts      ______________________WD 1_______________________________________)              

Query     1761 DAMAKEPNINSFVIFIGSLSDEADQLQRELPVGKAFVLKDTSELPKIMETIFSSTIAQ 1818
WD40-rpts

1 WD40-repeats found in QUERY=F11C1.5d (Len=1818):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 48  1663-1746     3.34  252.81  0.02413       30.0%     11.39

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1663-1746   DGKTDKVQYDIIGHSGDSPCVSFVKTDHHPKNNKERLDTLKRMIAHTQYCVSGDNTVESLQFAIKELAAKKDDFDETVVILVSD

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSG------------------SEDGT-----------------------IKVWD