Input parameters:

  Query = F09A5.3b (Len=236)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F09A5.3b, Len=236):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKEVEVAFMEQDTISNVLRGGHGEWCEMFKDNANEMDAHMCFIKNSVFRAAVVMQFIYNCTMSVFRCCRNRMLHHFLIDP 80  
WD40-rpts                            (_________________________________________________________

Query       81 LGRIIPENGDYVHKIITNPRFHFARLLRSSLRILEHEIQRIEFTRECIHEFIQFLNLQLPQVGLTNKNLNQKVALEKRTD 160 
WD40-rpts      ___________________WD 1_________________________________________________________

Query      161 LEAIAKQHSFLWKNYKCWHNKNLNFLLTTERLMACNLCKIIRMRDMHVVVLNNWTDFSVIPAPLHPRNFESLFIKL 236 
WD40-rpts      __________________)                                                         

1 WD40-repeats found in QUERY=F09A5.3b (Len=236):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-179      4.02  280.72  0.01022       22.5%     10.43

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-179    GEWCEMFKDNANEMDAHMCFIKNSVFRAAVVMQFIYNCTMSVFRCCRNRMLHHFLIDPLGRIIPENGDYVHKIITNPRFHFARLLRSSLRILEHEIQRIEFTRECIHEFIQFLNLQLPQVGLTNKNLNQKVALEKRTDLEAIAKQHSFLWKNYKCWH

   WD40 Template    GE--------------CL------------------------------------------RTLSGHTSGVTSVSFSPD-------------------------------------GKRLVSGSE-------------D------------GTIKVWD