Input parameters:

  Query = F08G12.2 (Len=331)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F08G12.2, Len=331):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALVTSSGQQLVSSGFPQQTAQRFSNLMAPTMVLLGHEGEIYTGAFSPDGTCLATSGYDQKIFFWNVYGECENFSTIKGH 80  
WD40-rpts      (__________WD 1_________)  (_________________WD 2________________)    (_________

Query       81 SGAVMDLKFTTDSSSLVSCGTDKSVRVWDMETGTCARRFRTHTDFVNAVHPSRRGVTLVASASDDGTCRVHDMRTKEPVK 160 
WD40-rpts      ________WD 3________________)   (_________________WD 4_________________)   (____

Query      161 TYTNRYQQTAVTFNDSSDQVISGGIDNVLKVWDMRRDEITYTLTGHRDTITGISLSPSGKFIISNSMDCTVRQWDIRPFV 240 
WD40-rpts      ____________WD 5________________)   (_________________WD 6________________)     

Query      241 PGQRSVGVFAGHNHNFEKNLLKCSWSPCERFITAGSSDRFLYVWETLSKKIVYKLPGHMGSVNCTDFHPKEPIMLSCGSD 320 
WD40-rpts        (___________________WD 7__________________)   (_________________WD 8__________

Query      321 KRVFLGEIDMS 331 
WD40-rpts      ______)    

8 WD40-repeats found in QUERY=F08G12.2 (Len=331):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-25       3.38  254.26  0.02308       10.0%     30.58
  WD 2:  Seg  4    28-66       9.32  499.48  1.2e-05       30.0%     54.24
  WD 3:  Seg  8    71-109      9.90  523.50  5.5e-06       35.0%     56.85
  WD 4:  Seg 12   113-152      8.59  469.35  2.9e-05       42.5%     54.78
  WD 5:  Seg 16   156-193      8.27  456.29  4.4e-05       30.0%     56.53
  WD 6:  Seg 20   197-235     10.46  546.87  2.6e-06       42.5%     53.43
  WD 7:  Seg 24   243-285      7.74  434.29  8.7e-05       25.0%     56.97
  WD 8:  Seg 28   289-327      8.92  483.17  1.9e-05       20.0%     55.88

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-25     ------------------MALVTSSGQQLV-SSGFPQQTAQRFS
   WD 2   28-66     MAPTMVLLGHE----GEIYTGAFSPDGTCL-ATSGYDQKIFFWN
   WD 3   71-109    CENFSTIKGHS----GAVMDLKFTTDSSSL-VSCGTDKSVRVWD
   WD 4  113-152    GTCARRFRTHT----DFVNAVHPSRRGVTLVASASDDGTCRVHD
   WD 5  156-193    KEPVKTYTNRY----Q-QTAVTFNDSSDQV-ISGGIDNVLKVWD
   WD 6  197-235    DEITYTLTGHR----DTITGISLSPSGKFI-ISNSMDCTVRQWD
   WD 7  243-285    QRSVGVFAGHNHNFEKNLLKCSWSPCERFI-TAGSSDRFLYVWE
   WD 8  289-327    KKIVYKLPGHM----GSVNCTDFHPKEPIM-LSCGSDKRVFLGE

   WD40 Template    GECLRTLSGHT----SGVTSVSFSPDGKRL-VSGSEDGTIKVWD