Input parameters:

  Query = F08F3.1 (Len=281)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F08F3.1, Len=281):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNMLRLLIPFGSLFLVVRPFLLSSDDEPKRCYELELENCFREAFLEFLSSQFMQFNRSVRKSAIHPPIFHKRDVPVFHNE 80  
WD40-rpts                                                                                      

Query       81 TTVTPERPIEKKKRVRQIQICHDVRKFSSCFIRPGCSDQQAANIASVQYHMVFGKKLPMHVFLAYRGYGRELCDQQCYGN 160 
WD40-rpts                                                                                      

Query      161 NLAKCKNKMSQDEQQEEQGYILELSSIIGHIAPDRDVTVACNRFNKILINLMRLRKTHCGDMARCTCTDSTVQQGVDGCN 240 
WD40-rpts                       (_____________________________________WD 1_____________________

Query      241 SGCEHLLHLDLDQLATSSKNHSFSFFLCNLLLYLSYVFIVI 281 
WD40-rpts      ________________)                        

1 WD40-repeats found in QUERY=F08F3.1 (Len=281):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   178-257      3.88  274.94  0.01221       25.0%     21.35

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  178-257    QGYILELSSIIGHIAPDRDVTVACNRFNKILINLMRLRKTHCGDMARCTCTDSTVQQGVDGCNSGCEHLLHLDLDQLATS

   WD40 Template    TGECLRTLS--GHTSGVTSVSFSPDG--------------------KRLVSGS-----EDGTIKVW------D-------