Input parameters:

  Query = F02E9.10c (Len=455)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F02E9.10c, Len=455):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDMMNEEGIPQATIVAKYEKAHNRSVVGIWSFRFCGQIGMLSVSHDCSKLWILQEDSSNNISLDERMVLAKWRTAIQAA 80  
WD40-rpts           (_____________________WD 1_____________________)          (________________

Query       81 DISVDGKYMVAVGMNSIVYEVELVNTVKSMAFDFGYLDAVFCAVSPLKTGYVTASYSGHLNEIQHSSNEIIRQEPFPTVK 160 
WD40-rpts      _WD 2________________)   (_________________WD 3________________)   (____________

Query      161 QISCLKYSRDAKYLAIGQLDGAIEMLYSENFKNYHKYEVHSMRIRKIEFLPNEERFLSACDDRLIKLHSLSEFTETDPSR 240 
WD40-rpts      _____WD 4_________________)   (_________________WD 5________________)           

Query      241 STKAIRVYSAHDAPVTGLTIDEKSGGTRFASSSASSQIFIWHIEMTTPIMSITNEHTSTISALSFSPTSRHLLSGGDDAM 320 
WD40-rpts       (__________________WD 6_________________)    (_________________WD 7____________

Query      321 ILIYRIPGVGENTPVHVAYYPPVEQPSDITEPESSSQLAEVPSASPYDEHDQQENEPPSDYTQEGGHEYYRSHEEYDENA 400 
WD40-rpts      ____)(_______________WD 8______________)                                        

Query      401 PAAQYQEYNPYAEPRTPPREDDEEIGNYVYNSTTEHQQNNESASPPAHEQYDPSA 455 
WD40-rpts                                                             

8 WD40-repeats found in QUERY=F02E9.10c (Len=455):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-53       6.58  386.38  0.00039       20.0%     42.20
  WD 2:  Seg  5    64-102      7.81  437.22  8.0e-05       15.0%     51.93
  WD 3:  Seg  9   106-144      6.17  369.54  0.00065       12.5%     55.25
  WD 4:  Seg 13   148-187      7.26  414.39  0.00016       25.0%     54.71
  WD 5:  Seg 17   191-229      9.09  490.01  1.5e-05       20.0%     57.14
  WD 6:  Seg 21   242-282      7.71  433.03  9.1e-05       27.5%     53.71
  WD 7:  Seg 25   287-325      9.20  494.72  1.3e-05       30.0%     51.18
  WD 8:  Seg 29   326-360      6.22  371.41  0.00061        7.5%     38.19

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-53     NEEGIPQATIVAKYEK-AHNRSVVGIWSFRF--CGQIGMLSVSHDCSKLWI
   WD 2   64-102    -LDERMV---L----A-KWRTAIQAA-DISV--DGKYMVAVGMNSIVYEVE
   WD 3  106-144    -TVKSMA---F----D-FGYLDAVFC-AVSP--LKTGYVTASYSGHLNEIQ
   WD 4  148-187    -NEIIRQ---E----PFPTVKQISCL-KYSR--DAKYLAIGQLDGAIEMLY
   WD 5  191-229    -FKNYHK---Y----E-VHSMRIRKI-EFLP--NEERFLSACDDRLIKLHS
   WD 6  242-282    -TKAIRV---Y----S-AHDAPVTGL-TIDEKSGGTRFASSSASSQIFIWH
   WD 7  287-325    -TPIMSI---T----N-EHTSTISAL-SFSP--TSRHLLSGGDDAMILIYR
   WD 8  326-360    -----IP---G----V-GENTPVHVA-YYPP--VEQPSDITEPESSSQLAE

   WD40 Template    TGECLRT---L----S-GHTSGVTSV-SFSP--DGKRLVSGSEDGTIKVWD