Input parameters:

  Query = F02E8.5 (Len=578)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F02E8.5, Len=578):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQTRSIDNVVNWSRCVHPSCVAWVIFIHFCFAKNCSILYFVLFQFTFFAELMADSYRKLIIERLEDVKQRNKQTATLYNN 80  
WD40-rpts                (_____________________________________________________________________

Query       81 YSKLAEQLEKKHKYGTSSSNSSQLETGELARVKEEMAELYRSKCQNDQRLIDANHRIADFEKKSSAIIAEKIALEATAKS 160 
WD40-rpts      ______________________________________________________________WD 1______________

Query      161 ICAKYAKTEVELQRLKVDNDQLNDERIASNTTVTMLTKQIQDIENDRIHFLNKIRELNEQRVDFLNAEVALEEKRRNSRI 240 
WD40-rpts      ________________________________________________________________________________

Query      241 QDMITSAVQDITDKDTKLEEMLRAMPDTNSNGDLLLGDSVPSRAEFVLECEEGEVNDVHWLDGETFATGGSDRNIKIWKV 320 
WD40-rpts      _____________________________________)   (________________WD 2________________) 

Query      321 DGHGGYTRIGTLAGSNAAFTRIDYERDRKHFIASSNDKNVRIWNLDNSRLLSTLSGHSDQVTCVKFYQSHSAVSGSADRV 400 
WD40-rpts           (_________________WD 3________________)   (________________WD 4____________

Query      401 IKIWDIQNQRCSRSLFPASKVLDVATNMGASPSLFASGHFDKKLRFYDGRSTDPVRTVDMGGRITSLDVTMSGCELLVST 480 
WD40-rpts      ____)   (_________________WD 5_________________)   (________________WD 6________

Query      481 RDDTISLIDLRTFQTVHCYSAENYRTSSDLSRVVLSSGNEYVAAGSSNGSIFVWNRNSTKLEKQLCSNSENAIFSLSWNP 560 
WD40-rpts      ________)   (___________________WD 7__________________)   (_________________WD 8

Query      561 TGYGLLSSSKQKFVTLWK 578 
WD40-rpts      _________________)

8 WD40-repeats found in QUERY=F02E8.5 (Len=578):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-278      3.38  254.26  0.02308       17.5%     -6.68
  WD 2:  Seg  2   282-319      6.89  399.41  0.00026       25.0%     52.45
  WD 3:  Seg  6   326-364      9.26  497.32  1.2e-05       22.5%     53.04
  WD 4:  Seg 10   368-405      9.10  490.65  1.5e-05       47.5%     51.47
  WD 5:  Seg 14   409-448      7.20  411.90  0.00017       17.5%     55.42
  WD 6:  Seg 18   452-489      7.58  427.57  0.00011       25.0%     51.71
  WD 7:  Seg 22   493-535      7.80  436.83  8.1e-05       25.0%     54.78
  WD 8:  Seg 26   539-578      7.24  413.64  0.00017       22.5%     48.99

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-278    NWSRCVHPSCVAWVIFIHFCFAKN-CSILYFVLFQFTFFAELMADSYRKLIIERLEDVKQRNKQTATLYNNYSKLAEQLEKKHKYG-TSSSNSSQLETGELARVKEEMAELYRSKCQNDQRLIDANHRIADFEKKSSAIIAEKIALEATAKSICAKYAKTEVELQRLKVDNDQLNDERIASNTTVTMLTKQIQDIENDRIHFLNKIRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNGDLLLGD
   WD 2  282-319    -SRAEFVLECE------------E-G-----------------------------------------------------------E-VNDVH-------------------------------------------------------------------------------------------------------------------------------------------------------W-LDGE------TFATGGSDRNIKIWK
   WD 3  326-364    -YTRIGTLAGS------------N-A-----------------------------------------------------------A-FTRID-------------------------------------------------------------------------------------------------------------------------------------------------------YERDRK------HFIASSNDKNVRIWN
   WD 4  368-405    -SRLLSTLSGH------------S-D-----------------------------------------------------------Q-VTCVK-------------------------------------------------------------------------------------------------------------------------------------------------------FYQSHS-------AVSGSADRVIKIWD
   WD 5  409-448    -QRCSRSLFPA------------S-K-----------------------------------------------------------VLDVATN-------------------------------------------------------------------------------------------------------------------------------------------------------MGASPS------LFASGHFDKKLRFYD
   WD 6  452-489    -TDPVRTV-DM------------G-G-----------------------------------------------------------R-ITSLD-------------------------------------------------------------------------------------------------------------------------------------------------------VTMSGC------ELLVSTRDDTISLID
   WD 7  493-535    -FQTVHCYSAE--------NYRTS-S-----------------------------------------------------------D-LSRVV-------------------------------------------------------------------------------------------------------------------------------------------------------LSSGNE------YVAAGSSNGSIFVWN
   WD 8  539-578    -TKLEKQLCSN------------SEN-----------------------------------------------------------A-IFSLS-------------------------------------------------------------------------------------------------------------------------------------------------------WNPTGY------GLLSSSKQKFVTLWK

   WD40 Template    TGECLRTLSGH------------T-S-----------------------------------------------------------G-VTSVS-------------------------------------------------------------------------------------------------------------------------------------------------------FSPDGK------RLVSGSEDGTIKVWD