Input parameters:

  Query = F01F1.3 (Len=248)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F01F1.3, Len=248):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNDDKLRSLFASLATLTQQGPIPVQAYSMLAGQHSTEVLAEHMRLRWLSDGRFGPVAANILMHIHKSDPKDISLSSNVLA 80  
WD40-rpts                                                                                      

Query       81 LLLNDYRNRLSVRNDSRLMFRNCVKTLFSMYPVYVKMDECVSKCFIKPMFSSLDALIDDAPDTEDLETAGILLSENGRVL 160 
WD40-rpts                                    (________________________________________________W

Query      161 HDLNSYLVERIIVKLRHKLISEDPIVTKHVRQIFIHVYDLWAFGWSELNIPECLLTLSAEGKLSIVDQTPLRKNDISKQE 240 
WD40-rpts      D 1________________________________________________)                            

Query      241 FGSKESIV 248 
WD40-rpts              

1 WD40-repeats found in QUERY=F01F1.3 (Len=248):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   111-212      3.18  246.20  0.02954       17.5%     15.25

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  111-212    YPVYVKMDECVSKCFIKPMFSSLDALIDDAPDTEDLETAGILLSENGRVLHDLNSYLVERIIVKLRHKLISEDPIVTKHVRQIFIHVYDLWAFGWSELNIPE

   WD40 Template    TGECLRT--------LSGHTS----------GVTS-----VSFSPDGKRLVS-----------------GSEDGT----------------------IKVWD