Input parameters:
Query = ENSP00000430912 (Len=248)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000430912, Len=248):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVMADQNQVWVGSEDSVIYIINVHSMSCNKQLTAHCSSVTDLIVQDGQEAPSNVYSCSMDGMVLVWNVSTLQVTSRFQLP 80
WD40-rpts (__________________WD 1__________________) (_________
Query 81 RGGLTSIRLHGGRLWCCTGNSIMVMKMNGSLHQELKIEENFKDTSTSFLAFQLLPEEEQLWAACAGRSEVYIWSLKDLAQ 160
WD40-rpts _______WD 2_______________)(_____________________WD 3____________________) (
Query 161 PPQRVPLEDCSEINCMIRVKKQVWVGSRGLGQGTPKGKIYVIDAERKTVEKELVAHMDTVRTLCSAEDRYVLSGSGREEG 240
WD40-rpts ___________________WD 4___________________) (_________________WD 5____________
Query 241 KVAIWKGE 248
WD40-rpts _____)
5 WD40-repeats found in QUERY=ENSP00000430912 (Len=248):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 26-67 8.13 450.31 5.3e-05 30.0% 51.19
WD 2: Seg 7 71-107 5.43 339.04 0.00168 10.0% 48.76
WD 3: Seg 11 108-154 4.61 305.14 0.00480 10.0% 45.60
WD 4: Seg 15 160-203 5.36 336.08 0.00184 20.0% 34.75
WD 5: Seg 19 207-246 7.63 429.64 0.00010 25.0% 36.79
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 26-67 -M------SCNKQLTAHCSSVTDLIVQDG-----QEAPSNVY-SC-SMDGMVLVWN
WD 2 71-107 -L------QVTSRFQLPRGGLTSIRLHGG-----R-----LW-CC-TGNSIMVMKM
WD 3 108-154 NGSLHQELKIEENFKDTSTSFLAFQLLPE-----EE---QLW-AACAGRSEVYIWS
WD 4 160-203 -Q------PPQRVPLEDCSEINCMIRVKKQVWVGSR---GLG-QG-TPKGKIYVID
WD 5 207-246 -K------TVEKELVAHMDTVRTLCSAED-----RY---VLSGSG-REEGKVAIWK
WD40 Template TG------ECLRTLSGHTSGVTSVSFSPD-----GK---RLV-SG-SEDGTIKVWD