WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000430912    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000430912 (Len=248)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000430912, Len=248):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVMADQNQVWVGSEDSVIYIINVHSMSCNKQLTAHCSSVTDLIVQDGQEAPSNVYSCSMDGMVLVWNVSTLQVTSRFQLP 80  
WD40-rpts                               (__________________WD 1__________________)   (_________

Query       81 RGGLTSIRLHGGRLWCCTGNSIMVMKMNGSLHQELKIEENFKDTSTSFLAFQLLPEEEQLWAACAGRSEVYIWSLKDLAQ 160 
WD40-rpts      _______WD 2_______________)(_____________________WD 3____________________)     (

Query      161 PPQRVPLEDCSEINCMIRVKKQVWVGSRGLGQGTPKGKIYVIDAERKTVEKELVAHMDTVRTLCSAEDRYVLSGSGREEG 240 
WD40-rpts      ___________________WD 4___________________)   (_________________WD 5____________

Query      241 KVAIWKGE 248 
WD40-rpts      _____)  



5 WD40-repeats found in QUERY=ENSP00000430912 (Len=248):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-67       8.13  450.31  5.3e-05       30.0%     51.19
  WD 2:  Seg  7    71-107      5.43  339.04  0.00168       10.0%     48.76
  WD 3:  Seg 11   108-154      4.61  305.14  0.00480       10.0%     45.60
  WD 4:  Seg 15   160-203      5.36  336.08  0.00184       20.0%     34.75
  WD 5:  Seg 19   207-246      7.63  429.64  0.00010       25.0%     36.79
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   26-67     -M------SCNKQLTAHCSSVTDLIVQDG-----QEAPSNVY-SC-SMDGMVLVWN
   WD 2   71-107    -L------QVTSRFQLPRGGLTSIRLHGG-----R-----LW-CC-TGNSIMVMKM
   WD 3  108-154    NGSLHQELKIEENFKDTSTSFLAFQLLPE-----EE---QLW-AACAGRSEVYIWS
   WD 4  160-203    -Q------PPQRVPLEDCSEINCMIRVKKQVWVGSR---GLG-QG-TPKGKIYVID
   WD 5  207-246    -K------TVEKELVAHMDTVRTLCSAED-----RY---VLSGSG-REEGKVAIWK

   WD40 Template    TG------ECLRTLSGHTSGVTSVSFSPD-----GK---RLV-SG-SEDGTIKVWD


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Last modified: 09 Jan 2019