WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000430320    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000430320 (Len=197)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000430320, Len=197):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM 80  
WD40-rpts      (______________WD 1______________)               (__________________WD 2________

Query       81 TRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEA 160 
WD40-rpts      __________)    (________________________WD 3________________________)           

Query      161 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 197 
WD40-rpts                                           



3 WD40-repeats found in QUERY=ENSP00000430320 (Len=197):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       4.36  294.68  0.00663       25.0%     31.42
  WD 2:  Seg  5    50-91       5.24  331.20  0.00214       25.0%     38.77
  WD 3:  Seg  8    96-149      5.79  353.90  0.00106       12.5%     43.20
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-34     ----------MEEL---------------TEVITAAEFHPNSCNTFVYSSSKGTIRLCD
   WD 2   50-91     EPEDPSNRSFFSEI---------------ISSISDVKFSHSG-RYMMTRD-YLSVKIWD
   WD 3   96-149    -NR---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFD

   WD40 Template    TGE---CLRTLSGH---------------TSGVTSVSFSPDG-KRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019