Input parameters:
Query = ENSP00000430320 (Len=197)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000430320, Len=197):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM 80
WD40-rpts (______________WD 1______________) (__________________WD 2________
Query 81 TRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEA 160
WD40-rpts __________) (________________________WD 3________________________)
Query 161 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 197
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000430320 (Len=197):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-34 4.36 294.68 0.00663 25.0% 31.42
WD 2: Seg 5 50-91 5.24 331.20 0.00214 25.0% 38.77
WD 3: Seg 8 96-149 5.79 353.90 0.00106 12.5% 43.20
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-34 ----------MEEL---------------TEVITAAEFHPNSCNTFVYSSSKGTIRLCD
WD 2 50-91 EPEDPSNRSFFSEI---------------ISSISDVKFSHSG-RYMMTRD-YLSVKIWD
WD 3 96-149 -NR---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFD
WD40 Template TGE---CLRTLSGH---------------TSGVTSVSFSPDG-KRLVSGSEDGTIKVWD