WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000427061    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000427061 (Len=67)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000427061, Len=67):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGNESSSVACLGHAAGQ 67  
WD40-rpts      (__________WD 1__________)   (________________WD 2________________)



2 WD40-repeats found in QUERY=ENSP00000427061 (Len=67):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       3.61  263.88  0.01717       17.5%     40.32
  WD 2:  Seg  3    30-67       5.75  352.02  0.00112       27.5%     40.42
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-26     ------------XINDIAFKPDGTQLILAAGS-RLLVYD
   WD 2   30-67     GTLLQPLKGHKDTVYCVAYAKDGNESSSVACLGHA-AGQ

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019