Input parameters:
Query = ENSP00000426950 (Len=165)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000426950, Len=165):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMD 80
WD40-rpts (__________________WD 1_________________) (_______________
Query 81 SKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMT 160
WD40-rpts _WD 2________________) (_________________WD 3_________________)
Query 161 PGAKT 165
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000426950 (Len=165):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 7-47 4.37 295.23 0.00652 5.0% 48.50
WD 2: Seg 7 65-102 3.51 259.56 0.01961 20.0% 24.75
WD 3: Seg 10 112-151 5.67 348.90 0.00124 20.0% 56.00
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 7-47 DRTAMQAWSPAQNHPIYLATGTS-AQQLDATFSTNASLEIFE
WD 2 65-102 SSHRYHKLI-W--GPYKMDSKGD-VSGVLIAGGENGNIILYD
WD 3 112-151 -EVVIAQND-KHTGPVRALDVNIFQTNLVASGANESEIYIWD
WD40 Template TGECLRTLS-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD