Input parameters:
Query = ENSP00000426937 (Len=189)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000426937, Len=189):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLRWLIGGGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLEL 80
WD40-rpts (____________________________WD 1___________________________) (______
Query 81 NGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKRLDVWLSGGNDLCVWNRKLDLLC 160
WD40-rpts ______________WD 2____________________) (_____________WD 3____________)
Query 161 KTSHLSDTGISALVEIPKNCVVAAVGKEL 189
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000426937 (Len=189):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 10-70 6.04 363.96 0.00077 27.5% 52.51
WD 2: Seg 6 74-119 8.75 476.28 2.4e-05 37.5% 56.01
WD 3: Seg 10 123-153 4.12 284.88 0.00898 15.0% 37.64
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 10-70 REPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
WD 2 74-119 -G----------------------EKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
WD 3 123-153 -T----------------------RQVQRISCFQSTVKRLDVWLS-------G--------GNDLCVWN
WD40 Template TG----------------------ECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD