WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000426937    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426937 (Len=189)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426937, Len=189):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRWLIGGGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLEL 80  
WD40-rpts               (____________________________WD 1___________________________)   (______

Query       81 NGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKRLDVWLSGGNDLCVWNRKLDLLC 160 
WD40-rpts      ______________WD 2____________________)   (_____________WD 3____________)       

Query      161 KTSHLSDTGISALVEIPKNCVVAAVGKEL 189 
WD40-rpts                                   



3 WD40-repeats found in QUERY=ENSP00000426937 (Len=189):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-70       6.04  363.96  0.00077       27.5%     52.51
  WD 2:  Seg  6    74-119      8.75  476.28  2.4e-05       37.5%     56.01
  WD 3:  Seg 10   123-153      4.12  284.88  0.00898       15.0%     37.64
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   10-70     REPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
   WD 2   74-119    -G----------------------EKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
   WD 3  123-153    -T----------------------RQVQRISCFQSTVKRLDVWLS-------G--------GNDLCVWN

   WD40 Template    TG----------------------ECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019