WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000426918    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426918 (Len=142)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426918, Len=142):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDWDKDGDVLAVIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHT 80  
WD40-rpts                                 (_________________WD 1________________)   (__________

Query       81 KRITCGCWNAENLLALGGEDKMITVSNQEGDTIRQTQVRSEPSNMQFFLMKMDDRTSAAESM 142 
WD40-rpts      ______WD 2________________)                                   



2 WD40-repeats found in QUERY=ENSP00000426918 (Len=142):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-66       8.52  466.43  3.2e-05       15.0%     54.64
  WD 2:  Seg  7    70-107      7.63  429.70  0.00010       25.0%     53.43
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   28-66     NKTSQLDNGMRDQMSFLLWSKVGSFLAVGTVKGNLLIYN
   WD 2   70-107    SRKIPVLGKHTKRITCGCWNAEN-LLALGGEDKMITVSN

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019