Input parameters:
Query = ENSP00000426918 (Len=142)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000426918, Len=142):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDWDKDGDVLAVIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHT 80
WD40-rpts (_________________WD 1________________) (__________
Query 81 KRITCGCWNAENLLALGGEDKMITVSNQEGDTIRQTQVRSEPSNMQFFLMKMDDRTSAAESM 142
WD40-rpts ______WD 2________________)
2 WD40-repeats found in QUERY=ENSP00000426918 (Len=142):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 28-66 8.52 466.43 3.2e-05 15.0% 54.64
WD 2: Seg 7 70-107 7.63 429.70 0.00010 25.0% 53.43
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 28-66 NKTSQLDNGMRDQMSFLLWSKVGSFLAVGTVKGNLLIYN
WD 2 70-107 SRKIPVLGKHTKRITCGCWNAEN-LLALGGEDKMITVSN
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD