WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000426847    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426847 (Len=211)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426847, Len=211):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XIPASLSWCWNAEDVVAFVSHRGPLFIWTISGPDSGVIVHKDAHSFLSDICMFRWHTHQKGKVVFGHIDGSLSIFHPVSV 80  
WD40-rpts      (____________WD 1___________)  (____________________WD 2___________________)    

Query       81 QSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLAT 160 
WD40-rpts               (________________WD 3________________)(___________________WD 4_________

Query      161 ASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGKRYFIEIRNTMKWLF 211 
WD40-rpts      __________)   (_______________WD 5_______________) 



5 WD40-repeats found in QUERY=ENSP00000426847 (Len=211):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-29       3.46  257.65  0.02080       12.5%     40.86
  WD 2:  Seg  4    32-76       6.84  397.15  0.00028       15.0%     51.09
  WD 3:  Seg  9    90-127      6.15  368.63  0.00067       15.0%     46.67
  WD 4:  Seg 13   128-171      8.48  464.80  3.4e-05       40.0%     57.19
  WD 5:  Seg 17   175-210      6.19  370.44  0.00063       15.0%     46.84
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-29     -------------------XIPASLSWCWNAE-D-VVAFVSHRGPLFIWT
   WD 2   32-76     GPD---SGVIVHKDAHSFLSDICMFRWHT-HQ-KGKVVFGHIDGSLSIFH
   WD 3   90-127    SST-----SEAV----PPPTLTQNQAFSL-PP-G-HAVCCFLDGGVGLYD
   WD 4  128-171    MGAKKWDFLRDL----GHVETIFDCKFKP-DDPN-LLATASFDGTIKVWD
   WD 5  175-210    -LT---AVYTSP----GNEGVIYSLSWAP-GK-R-YFIEIR---NTMKWL

   WD40 Template    TGE---CLRTLS----GHTSGVTSVSFSP-DG-K-RLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019