Input parameters:
Query = ENSP00000426847 (Len=211)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000426847, Len=211):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XIPASLSWCWNAEDVVAFVSHRGPLFIWTISGPDSGVIVHKDAHSFLSDICMFRWHTHQKGKVVFGHIDGSLSIFHPVSV 80
WD40-rpts (____________WD 1___________) (____________________WD 2___________________)
Query 81 QSPTKNHYTSSTSEAVPPPTLTQNQAFSLPPGHAVCCFLDGGVGLYDMGAKKWDFLRDLGHVETIFDCKFKPDDPNLLAT 160
WD40-rpts (________________WD 3________________)(___________________WD 4_________
Query 161 ASFDGTIKVWDINTLTAVYTSPGNEGVIYSLSWAPGKRYFIEIRNTMKWLF 211
WD40-rpts __________) (_______________WD 5_______________)
5 WD40-repeats found in QUERY=ENSP00000426847 (Len=211):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-29 3.46 257.65 0.02080 12.5% 40.86
WD 2: Seg 4 32-76 6.84 397.15 0.00028 15.0% 51.09
WD 3: Seg 9 90-127 6.15 368.63 0.00067 15.0% 46.67
WD 4: Seg 13 128-171 8.48 464.80 3.4e-05 40.0% 57.19
WD 5: Seg 17 175-210 6.19 370.44 0.00063 15.0% 46.84
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-29 -------------------XIPASLSWCWNAE-D-VVAFVSHRGPLFIWT
WD 2 32-76 GPD---SGVIVHKDAHSFLSDICMFRWHT-HQ-KGKVVFGHIDGSLSIFH
WD 3 90-127 SST-----SEAV----PPPTLTQNQAFSL-PP-G-HAVCCFLDGGVGLYD
WD 4 128-171 MGAKKWDFLRDL----GHVETIFDCKFKP-DDPN-LLATASFDGTIKVWD
WD 5 175-210 -LT---AVYTSP----GNEGVIYSLSWAP-GK-R-YFIEIR---NTMKWL
WD40 Template TGE---CLRTLS----GHTSGVTSVSFSP-DG-K-RLVSGSEDGTIKVWD