WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000426499    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426499 (Len=394)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426499, Len=394):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKI 80  
WD40-rpts                              (_________________WD 1________________)   (_____________

Query       81 TAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCVWNRKLDLLCK 160 
WD40-rpts      _______WD 2____________________)   (________________WD 3_______________)   (____

Query      161 TSHLSDTDLSFVTGSHVGELIIWDALDWTMQAYERNFWDPSPQLDTQQEIKLCQKSNDISIHHFTCDEENVFAAVGRGLY 240 
WD40-rpts      _____________WD 4________________)           (________________WD 5______________

Query      241 VYSLQMKRVIACQKTAHDSNVLHVARLPNRQLISCSEDGSVRIWELREKQQLAAEPVPTGFFNMWGFGRVSKQASQPVKK 320 
WD40-rpts      __)    (________________WD 6________________)   (______________WD 7_____________

Query      321 QQENATSCSLELIGDLIGHSSSVEMFLYFEDHGLVTCSADHLIILWKNGERESGLRSLRLFQKLEENGDLYLAV 394 
WD40-rpts      _)       (________________WD 8________________)                           



8 WD40-repeats found in QUERY=ENSP00000426499 (Len=394):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    25-63       6.18  370.04  0.00064       27.5%     53.32
  WD 2:  Seg  5    67-112      8.58  469.21  3.0e-05       37.5%     58.25
  WD 3:  Seg  9   116-152      6.80  395.47  0.00029       20.0%     53.57
  WD 4:  Seg 13   156-194      8.42  462.36  3.6e-05       15.0%     53.14
  WD 5:  Seg 17   206-243      5.39  337.37  0.00177       10.0%     51.46
  WD 6:  Seg 21   248-285      7.43  421.58  0.00013       30.0%     49.20
  WD 7:  Seg 25   289-322      5.21  329.74  0.00224       15.0%     45.85
  WD 8:  Seg 29   330-367      7.51  424.82  0.00012       32.5%     47.17
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-63     PYTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
   WD 2   67-112    -GEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
   WD 3  116-152    -TRQVQRISCFQSTVKCLTVLQR-------LDVWLSGGND--LCVWN
   WD 4  156-194    -DLLCKTSHLSDTDLSFVTGSHV-------GELIIWDALDWTMQAYE
   WD 5  206-243    -TQQEIKLCQKSNDISIHHFTCD-------EENVFAAV-GRGLYVYS
   WD 6  248-285    -RVIACQKTAHDSNVLHVARLPN-------RQ-LISCSEDGSVRIWE
   WD 7  289-322    -KQQLAAEPVP-----TGFFNMW-------GFGRVSKQASQPVKKQQ
   WD 8  330-367    -LELIGDLIGHSSSVEMFLYFED-------HG-LVTCSADHLIILWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019