Input parameters:
Query = ENSP00000426499 (Len=394)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000426499, Len=394):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 GGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKI 80
WD40-rpts (_________________WD 1________________) (_____________
Query 81 TAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCVWNRKLDLLCK 160
WD40-rpts _______WD 2____________________) (________________WD 3_______________) (____
Query 161 TSHLSDTDLSFVTGSHVGELIIWDALDWTMQAYERNFWDPSPQLDTQQEIKLCQKSNDISIHHFTCDEENVFAAVGRGLY 240
WD40-rpts _____________WD 4________________) (________________WD 5______________
Query 241 VYSLQMKRVIACQKTAHDSNVLHVARLPNRQLISCSEDGSVRIWELREKQQLAAEPVPTGFFNMWGFGRVSKQASQPVKK 320
WD40-rpts __) (________________WD 6________________) (______________WD 7_____________
Query 321 QQENATSCSLELIGDLIGHSSSVEMFLYFEDHGLVTCSADHLIILWKNGERESGLRSLRLFQKLEENGDLYLAV 394
WD40-rpts _) (________________WD 8________________)
8 WD40-repeats found in QUERY=ENSP00000426499 (Len=394):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 25-63 6.18 370.04 0.00064 27.5% 53.32
WD 2: Seg 5 67-112 8.58 469.21 3.0e-05 37.5% 58.25
WD 3: Seg 9 116-152 6.80 395.47 0.00029 20.0% 53.57
WD 4: Seg 13 156-194 8.42 462.36 3.6e-05 15.0% 53.14
WD 5: Seg 17 206-243 5.39 337.37 0.00177 10.0% 51.46
WD 6: Seg 21 248-285 7.43 421.58 0.00013 30.0% 49.20
WD 7: Seg 25 289-322 5.21 329.74 0.00224 15.0% 45.85
WD 8: Seg 29 330-367 7.51 424.82 0.00012 32.5% 47.17
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-63 PYTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
WD 2 67-112 -GEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
WD 3 116-152 -TRQVQRISCFQSTVKCLTVLQR-------LDVWLSGGND--LCVWN
WD 4 156-194 -DLLCKTSHLSDTDLSFVTGSHV-------GELIIWDALDWTMQAYE
WD 5 206-243 -TQQEIKLCQKSNDISIHHFTCD-------EENVFAAV-GRGLYVYS
WD 6 248-285 -RVIACQKTAHDSNVLHVARLPN-------RQ-LISCSEDGSVRIWE
WD 7 289-322 -KQQLAAEPVP-----TGFFNMW-------GFGRVSKQASQPVKKQQ
WD 8 330-367 -LELIGDLIGHSSSVEMFLYFED-------HG-LVTCSADHLIILWK
WD40 Template TGECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD