WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000426337    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426337 (Len=1889)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426337, Len=1889):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 QQLCILPPHHVNVLPPLHIKTEAVWLAYKLGDWKTSVSIGVAFQLFCKRDSNFMRSKKKSLNLPLRMTPAQIFQEKLQCV 80  
WD40-rpts                                   (__________________________________________________

Query       81 LGQPASLEAKNEMGSKYKQFTDPIEEEDANLLFGSVQEVLKASVMADADILSETFQLLIDSAKDFSKRLWGLVPFGLYLP 160 
WD40-rpts      ________WD 1__________________________________________________________)         

Query      161 APPLYCPQPAILSEEDGDDLLLKAEKNNRQKVSGILQRVLLLFRAAQCSFPVAQWYILQLRWARKVMQKIRMKGSLPSLS 240 
WD40-rpts                                                                                      

Query      241 PFPQSLLNYCKGGIAFFRPGAAGDHKLDEVSIRAIGCFRELCALCWMLHVRDKLSYSCRQYQKARENVKGEKDLEVEFDS 320 
WD40-rpts                                                                                      

Query      321 CMIEHCLSAVEWAYRMLPFSRFFNMEELIQDIILSLIGELPPIRKVAEIFVKAFPYPEDVRVPLRDKYHSLHQRLRHCVV 400 
WD40-rpts                                                                                      

Query      401 KGPQTEEMMSVVMHSIQKVRVKALKRVQRNIGSFEVNIWEPIEEEKPDEAPGVDRYSLGTSLSRSTLTELGDSVVHSDAD 480 
WD40-rpts                                                                                      

Query      481 TFSEALSVEEKSRINIYQRNAPNHMELTSIHKPTDKRKMCNQKENPTKKEDHEKLSQNTLPVIGVWEFERDDDEYIKFLD 560 
WD40-rpts                                                                                      

Query      561 LFLSYILERDLPYSRDADIPFLTSFSGKLREHELNSLLFDVHTTLKRHQSKTKSQNVFRAGSCFVVAPESYESEKSSSLN 640 
WD40-rpts                                                                                      

Query      641 DEYGMHLENQKLSSSVLVNQGIKPFLQYPSNEVNKNEGMSGLFGLKQRSIYKIQDDTREKCLIQRSSNHIFWTPKSIKTR 720 
WD40-rpts                                                                                      

Query      721 RCIFKAIQCNDINPQEDLPLALNTFGSIGRLLEWMIRWSNRRLLCDSGITESSSEYSPVIRVKTSTAAILTSLWLLEQPY 800 
WD40-rpts                                                                                      

Query      801 FATYKAKNAIIKMVENRDTGCQIGPNIERESKSDAGGSVAVATPGGTEERNGQNKSCQNILNRMPTEAKNPDIKEINDDI 880 
WD40-rpts                                                                                      

Query      881 ISITHNTKKEFIDIDENLLEVEAFTEEEMDMHISDYEDIEESVGGFRSPSLAICMMTLPQQLEEEFTEEVQCQREEPLET 960 
WD40-rpts                                                                                      

Query      961 IMEEKSTEQKGMIEAFSHPGHTTPQSMQVDTSSEISSAQISTYKEKSSSVPLLISNGVNVASQPPAPTPQKTQRNEFTAQ 1040
WD40-rpts                                                                                      

Query     1041 LPDCSESVRQMLQDEMFKLVQLQQINFMSLMQIVGSSFANLPDTQQLVQQSQSVHLGESQESNLRGCGDVEDSNKNLKER 1120
WD40-rpts                                                                                      

Query     1121 FFIKPQSMGENAREPRKNSPHCHEGTIPSGQNSTGNVQNVPHGSIPLCQLNGQPRKKGPIPSSQNLPSTSFYPAPAGNTH 1200
WD40-rpts                                                                                      

Query     1201 LYLLSTPSVVQKAPRLIPHAKTFSPGDGFPLLQFKSKQEFQPLFLHTGSIPQVPFRPLPQPREAWGLSDSFQPALPQRAA 1280
WD40-rpts                                                                                      

Query     1281 QTTPASHLNVSQYNTEARKKEVEQKTWAETVITEIPNHVNLDQYVGQENLTPQQDSSVFIKPEKLFDVKPGTLEISPHHS 1360
WD40-rpts                                                                                      

Query     1361 FGLPLLYLPLKPPNMFPSTSRASITVPSTPIQPIAEERKYPRLSLLHSHLSPENRCKKTQLIPLENLIAFKQSQQKLTHN 1440
WD40-rpts                                                                                      

Query     1441 LFEQGDAGHLQLLKVKIEPPEVRQGKDSKKRQRRRAEKELQEKRCEKLRRKPNVTFRPENSIINNDDSEIIKKPKEQQEH 1520
WD40-rpts                                                                                      

Query     1521 CGSHPLDDFDVPFEMLQDDNTSAGLHFMASVKKKAIGSQDASTNTDPEHEPLTAPQLLVPDVYLNLKLSSEMSEKPWSPS 1600
WD40-rpts                                                                                      

Query     1601 IPHTVTNLVGHTYINVIDIEANDLLQELPVREEPSNDNVIKQQSDHLAVPSSAELHYMAASVTNAVPPHNFKSQEVTPAC 1680
WD40-rpts                                                                                      

Query     1681 LDGKSLRAGITEVKEPSVTSPTPSDIQQNKGLPKPEFRFKGQSTKSDSAEDYLLWKRLQGVSAACPAPSSAAHQLEHLSA 1760
WD40-rpts                                                                                      

Query     1761 KLQKIDEQLLAIQNIAENIEQDFPKPEMLDLHCDKIGPVDHIEFSSGPEFKKTLASKTISISEEVRFLTHMDEEDQSDKK 1840
WD40-rpts                                                                                      

Query     1841 ETSEPEFSITENYSGQKTCVFPTADSAVSLSSSSDQNTTSPVFQYIRSR 1889
WD40-rpts                                                       



1 WD40-repeats found in QUERY=ENSP00000426337 (Len=1889):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    30-151      3.00  238.51  0.03736       22.5%      6.59
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   30-151    LGDWKTSVSIGVAFQLFCKRDSNFMRSKKKSLNLPLRMTPAQIFQEKLQCVLGQPASLEAKNEMGSKYKQFTDPIEEEDANLLFGSVQEVLKASVMADADILSETFQLLIDSAKDFSKRLWG

   WD40 Template    TGECLRTLSG---------HTSG-----VTSVSFSPDGK--------------RLVS-------GSE-----DGT----------------------IK--------------------VWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019