WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000426304    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426304 (Len=137)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426304, Len=137):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRTCEERPAEDGSDEEDPDSMEAPTRIRDTPEDIVLEAPASGLAFHPARDLLAAGDVDGDVFVFSYSCQEGETKELWSS 80  
WD40-rpts                                        (_____________WD 1_____________)       (______

Query       81 GHHLKACRAVAFSEDGQSEYWGRQPAMWWKGAVSSTMTWAPFPQSSLLSPRTKPSMF 137 
WD40-rpts      ___________WD 2________________)                         



2 WD40-repeats found in QUERY=ENSP00000426304 (Len=137):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    35-66       5.34  335.29  0.00188       17.5%     38.48
  WD 2:  Seg  4    74-112      6.44  380.75  0.00046       20.0%     42.98
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   35-66     -------IVLEAPASGLAFHPARDLLAAGDVDGDVFVFS
   WD 2   74-112    TKELWSSGHHLKACRAVAFSEDGQSEYWGRQPAMWWKGA

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019