Input parameters:
Query = ENSP00000426141 (Len=150)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000426141, Len=150):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSQEKDFYKKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKIT 80
WD40-rpts (________________WD 1________________) (______________
Query 81 AIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCVW 150
WD40-rpts ______WD 2____________________) (_______________WD 3_______________)
3 WD40-repeats found in QUERY=ENSP00000426141 (Len=150):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 25-62 6.75 393.49 0.00031 27.5% 52.66
WD 2: Seg 5 66-111 8.67 472.73 2.6e-05 37.5% 56.32
WD 3: Seg 8 115-150 4.70 309.01 0.00426 15.0% 43.17
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-62 YTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
WD 2 66-111 GEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
WD 3 115-150 TRQVQRISCFQSTVKCLTVLQR-------LDVWLSGGNDLCVW---
WD40 Template GECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD