WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000426141    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426141 (Len=150)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426141, Len=150):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQEKDFYKKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKIT 80  
WD40-rpts                              (________________WD 1________________)   (______________

Query       81 AIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCVW 150 
WD40-rpts      ______WD 2____________________)   (_______________WD 3_______________)



3 WD40-repeats found in QUERY=ENSP00000426141 (Len=150):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    25-62       6.75  393.49  0.00031       27.5%     52.66
  WD 2:  Seg  5    66-111      8.67  472.73  2.6e-05       37.5%     56.32
  WD 3:  Seg  8   115-150      4.70  309.01  0.00426       15.0%     43.17
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-62     YTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
   WD 2   66-111    GEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
   WD 3  115-150    TRQVQRISCFQSTVKCLTVLQR-------LDVWLSGGNDLCVW---

   WD40 Template    GECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019