WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000426101    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000426101 (Len=233)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000426101, Len=233):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160 
WD40-rpts      __________)   (_________________WD 3________________)    (__________________WD 4

Query      161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKTLFAGYTDNLVRVWQVTIGTR 233 
WD40-rpts      _________________)   (____________________WD 5____________________)      



5 WD40-repeats found in QUERY=ENSP00000426101 (Len=233):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.77  476.83  2.3e-05       32.5%     53.03
  WD 2:  Seg  5    53-91      10.17  534.57  3.9e-06       45.0%     52.89
  WD 3:  Seg  9    95-133     10.92  565.66  1.5e-06       50.0%     52.79
  WD 4:  Seg 13   138-178      7.99  444.51  6.4e-05       30.0%     53.52
  WD 5:  Seg 17   182-227      8.13  450.61  5.3e-05       32.5%     47.82
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-44     QMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASR-------DKTIIMWK
   WD 2   53-91     -GIPQRALRGHSHFVSDVVISSD-GQF--ALSGSW-------DGTLRLWD
   WD 3   95-133    -GTTTRRFVGHTKDVLSVAFSSD-NRQ--IVSGSR-------DKTIKLWN
   WD 4  138-178    -CKYTVQDESHSEWVSCVRFSPN-SSNPIIVSCGW-------DKLVKVWN
   WD 5  182-227    -CKLKTNHIGHTGYLNTVTVSPD-GSL--CASGGKTLFAGYTDNLVRVWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-GKR--LVSGSE-------DGTIKVWD


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Last modified: 09 Jan 2019