WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000425914    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000425914 (Len=156)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000425914, Len=156):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSR 80  
WD40-rpts            (_________________WD 1_________________)   (_________________WD 2_________

Query       81 DSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRQ 156 
WD40-rpts      _______)   (_________________WD 3________________)                          



3 WD40-repeats found in QUERY=ENSP00000425914 (Len=156):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       9.86  522.05  5.7e-06       37.5%     58.40
  WD 2:  Seg  5    50-88       9.87  522.24  5.7e-06       32.5%     56.92
  WD 3:  Seg  9    92-130     10.30  540.29  3.2e-06       37.5%     55.42
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    7-46     SGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWD
   WD 2   50-88     -NKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWD
   WD 3   92-130    -KASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019