Input parameters:
Query = ENSP00000425481 (Len=245)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000425481, Len=245):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPRRICVSAEKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVAKYAPSGFYIASG 80
WD40-rpts (______________WD 1_____________) (_________________WD 2_______
Query 81 DVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQ 160
WD40-rpts _________)(_____________________WD 3_____________________)(__________________WD
Query 161 SRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGG 240
WD40-rpts 4_________________) (_________________WD 5________________)
Query 241 IYAVS 245
WD40-rpts
5 WD40-repeats found in QUERY=ENSP00000425481 (Len=245):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 16-48 4.94 318.64 0.00316 5.0% 37.40
WD 2: Seg 7 52-90 9.43 504.15 1.0e-05 22.5% 45.58
WD 3: Seg 10 91-138 7.22 412.73 0.00017 20.0% 55.24
WD 4: Seg 14 139-179 9.99 527.43 4.8e-06 25.0% 53.38
WD 5: Seg 18 183-221 9.99 527.33 4.9e-06 37.5% 57.95
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 16-48 ----------LPQVERGVSKIIGGDPKGN-NFLYTN-G----KCVILRN
WD 2 52-90 -PA----LADIYTEHAHQVVVAKYAPSGF-YIASGDVS----GKLRIWD
WD 3 91-138 TTQKEHLLKYEYQPFAGKIKDIAWTEDSK-RIAVVGEGREKFGAVFLWD
WD 4 139-179 SGS----SVGEITGHNKVINSVDIKQSRPYRLATGSDD----NCAAFFE
WD 5 183-221 -FK----FKFTIGDHSRFVNCVRFSPDGN-RFATASAD----GQIYIYD
WD40 Template TGE----CLRTLSGHTSGVTSVSFSPDGK-RLVSGSED----GTIKVWD