WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000425481    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000425481 (Len=245)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000425481, Len=245):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPRRICVSAEKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVAKYAPSGFYIASG 80  
WD40-rpts                     (______________WD 1_____________)   (_________________WD 2_______

Query       81 DVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQ 160 
WD40-rpts      _________)(_____________________WD 3_____________________)(__________________WD 

Query      161 SRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGG 240 
WD40-rpts      4_________________)   (_________________WD 5________________)                   

Query      241 IYAVS 245 
WD40-rpts           



5 WD40-repeats found in QUERY=ENSP00000425481 (Len=245):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    16-48       4.94  318.64  0.00316        5.0%     37.40
  WD 2:  Seg  7    52-90       9.43  504.15  1.0e-05       22.5%     45.58
  WD 3:  Seg 10    91-138      7.22  412.73  0.00017       20.0%     55.24
  WD 4:  Seg 14   139-179      9.99  527.43  4.8e-06       25.0%     53.38
  WD 5:  Seg 18   183-221      9.99  527.33  4.9e-06       37.5%     57.95
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   16-48     ----------LPQVERGVSKIIGGDPKGN-NFLYTN-G----KCVILRN
   WD 2   52-90     -PA----LADIYTEHAHQVVVAKYAPSGF-YIASGDVS----GKLRIWD
   WD 3   91-138    TTQKEHLLKYEYQPFAGKIKDIAWTEDSK-RIAVVGEGREKFGAVFLWD
   WD 4  139-179    SGS----SVGEITGHNKVINSVDIKQSRPYRLATGSDD----NCAAFFE
   WD 5  183-221    -FK----FKFTIGDHSRFVNCVRFSPDGN-RFATASAD----GQIYIYD

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGK-RLVSGSED----GTIKVWD


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Last modified: 09 Jan 2019