Input parameters:
Query = ENSP00000424784 (Len=295)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000424784, Len=295):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHE 80
WD40-rpts (__________________WD 1_________________) (___________
Query 81 DSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQED 160
WD40-rpts ______WD 2_________________) (________________WD 3_______________)(____________
Query 161 HPIMSFTISKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPI 240
WD40-rpts ______WD 4_________________) (__________________WD 5__________________) (___
Query 241 AELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMDS 295
WD40-rpts ______________WD 6_________________)
6 WD40-repeats found in QUERY=ENSP00000424784 (Len=295):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 25-65 8.40 461.55 3.7e-05 35.0% 52.96
WD 2: Seg 7 69-108 8.87 481.16 2.0e-05 40.0% 56.40
WD 3: Seg 11 111-147 7.22 413.02 0.00017 20.0% 54.30
WD 4: Seg 15 148-188 8.26 455.92 4.5e-05 15.0% 54.09
WD 5: Seg 19 192-233 7.81 437.27 8.0e-05 25.0% 53.56
WD 6: Seg 23 237-276 8.88 481.42 2.0e-05 35.0% 55.41
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 25-65 -LKLL-KTLE-GHAYGVSYIA---WSPD-DNYLVACGPDDCSELWLWN
WD 2 69-108 -GELR-TKMSQSHEDSLTSVA---WNPD-GKRFVTGGQRGQ--FYQCD
WD 3 111-147 -GNLL-DSWE-GVR--VQCLW---CLSD-GKTVLASDTHQR--IRGYN
WD 4 148-188 FEDLTDRNIV-QEDHPIMSFT---ISKN-GRLALLNVATQG--VHLWD
WD 5 192-233 -RVLV-RKYQ-GVTQGFYTIHSCFGGHN-EDFIASGSEDHK--VYIWH
WD 6 237-276 -ELPI-AELT-GHTRTVNCVS---WNPQIPSMMASASDDGT--VRIWG
WD40 Template TGECL-RTLS-GHTSGVTSVS---FSPD-GKRLVSGSEDGT--IKVWD