WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000424784    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000424784 (Len=295)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000424784, Len=295):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHE 80  
WD40-rpts                              (__________________WD 1_________________)   (___________

Query       81 DSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQED 160 
WD40-rpts      ______WD 2_________________)  (________________WD 3_______________)(____________

Query      161 HPIMSFTISKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPI 240 
WD40-rpts      ______WD 4_________________)   (__________________WD 5__________________)   (___

Query      241 AELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMDS 295 
WD40-rpts      ______________WD 6_________________)                   



6 WD40-repeats found in QUERY=ENSP00000424784 (Len=295):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-65       8.40  461.55  3.7e-05       35.0%     52.96
  WD 2:  Seg  7    69-108      8.87  481.16  2.0e-05       40.0%     56.40
  WD 3:  Seg 11   111-147      7.22  413.02  0.00017       20.0%     54.30
  WD 4:  Seg 15   148-188      8.26  455.92  4.5e-05       15.0%     54.09
  WD 5:  Seg 19   192-233      7.81  437.27  8.0e-05       25.0%     53.56
  WD 6:  Seg 23   237-276      8.88  481.42  2.0e-05       35.0%     55.41
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-65     -LKLL-KTLE-GHAYGVSYIA---WSPD-DNYLVACGPDDCSELWLWN
   WD 2   69-108    -GELR-TKMSQSHEDSLTSVA---WNPD-GKRFVTGGQRGQ--FYQCD
   WD 3  111-147    -GNLL-DSWE-GVR--VQCLW---CLSD-GKTVLASDTHQR--IRGYN
   WD 4  148-188    FEDLTDRNIV-QEDHPIMSFT---ISKN-GRLALLNVATQG--VHLWD
   WD 5  192-233    -RVLV-RKYQ-GVTQGFYTIHSCFGGHN-EDFIASGSEDHK--VYIWH
   WD 6  237-276    -ELPI-AELT-GHTRTVNCVS---WNPQIPSMMASASDDGT--VRIWG

   WD40 Template    TGECL-RTLS-GHTSGVTSVS---FSPD-GKRLVSGSEDGT--IKVWD


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Last modified: 09 Jan 2019