Input parameters:
Query = ENSP00000424237 (Len=160)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000424237, Len=160):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80
WD40-rpts (__________________WD 1_________________) (________________WD 2______
Query 81 GSWDGTLRLWDLTTQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 160
WD40-rpts __________) (__________________WD 3_________________)
3 WD40-repeats found in QUERY=ENSP00000424237 (Len=160):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-44 8.72 475.00 2.5e-05 32.5% 53.65
WD 2: Seg 5 54-91 10.01 528.29 4.7e-06 42.5% 48.86
WD 3: Seg 11 114-154 8.05 446.98 5.9e-05 30.0% 52.98
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-44 QMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWK
WD 2 54-91 --IPQRALRGHSHFVSDVVISSD-GQF--ALSGSWDGTLRLWD
WD 3 114-154 -CKYTVQDESHSEWVSCVRFSPN-SSNPIIVSCGWDKLVKVWN
WD40 Template TGECLRTLSGHTSGVTSVSFSPD-GKR--LVSGSEDGTIKVWD