WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000424237    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000424237 (Len=160)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000424237, Len=160):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)         (________________WD 2______

Query       81 GSWDGTLRLWDLTTQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 160 
WD40-rpts      __________)                      (__________________WD 3_________________)      



3 WD40-repeats found in QUERY=ENSP00000424237 (Len=160):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.72  475.00  2.5e-05       32.5%     53.65
  WD 2:  Seg  5    54-91      10.01  528.29  4.7e-06       42.5%     48.86
  WD 3:  Seg 11   114-154      8.05  446.98  5.9e-05       30.0%     52.98
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-44     QMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWK
   WD 2   54-91     --IPQRALRGHSHFVSDVVISSD-GQF--ALSGSWDGTLRLWD
   WD 3  114-154    -CKYTVQDESHSEWVSCVRFSPN-SSNPIIVSCGWDKLVKVWN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-GKR--LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019