Input parameters:
Query = ENSP00000423902 (Len=112)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000423902, Len=112):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTVL 80
WD40-rpts (__________WD 1__________) (_________________WD 2________________) (________
Query 81 LCCPGWSAVARSRLTASSTSQVHAILLPQPPE 112
WD40-rpts ________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000423902 (Len=112):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-26 3.93 276.90 0.01149 17.5% 37.53
WD 2: Seg 4 30-68 10.44 545.76 2.7e-06 40.0% 57.43
WD 3: Seg 8 72-109 5.39 337.42 0.00176 12.5% 30.84
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-26 ------------XINDIAFKPDGTQLILAAGS-RLLVYD
WD 2 30-68 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWT
WD 3 72-109 EGILKYTVLLCCPGWS-AVARSRLTASSTSQVHAILLPQ
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD