WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000423234    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000423234 (Len=241)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000423234, Len=241):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFD 80  
WD40-rpts      (_______________WD 1_______________)     (_________________WD 2________________)

Query       81 VVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVSS 160 
WD40-rpts         (__________________WD 3_________________)  (___________________WD 4__________

Query      161 DKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDES 240 
WD40-rpts      _________)                  (_________________WD 5________________)             

Query      241 L 241 
WD40-rpts       



5 WD40-repeats found in QUERY=ENSP00000423234 (Len=241):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       6.56  385.63  0.00040       20.0%     43.32
  WD 2:  Seg  4    42-80       8.88  481.55  2.0e-05       25.0%     54.41
  WD 3:  Seg  8    84-124      5.22  330.49  0.00219       25.0%     56.65
  WD 4:  Seg 12   127-170      8.68  473.20  2.6e-05       30.0%     49.40
  WD 5:  Seg 16   189-227      8.16  451.74  5.1e-05       27.5%     55.25
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-36     ---MYERS----Y-MHRDVITHVVCTK--TDFIITASHDGHVKFWK
   WD 2   42-80     -IEFVKHF----R-SHLGVIESIAVSS-EGALFCSVGDDKAMKVFD
   WD 3   84-124    -FDMINML----KLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFI
   WD 4  127-170    GRGDNQPLHIFDK-LHTSPLTQIRLNP-VYKAVVSSDKSGMIEYWT
   WD 5  189-227    -DTDLYEF----A-KCKAYPTSVCFSP-DGKKIATIGSDRKVRIFR

   WD40 Template    TGECLRTL----S-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019