Input parameters:
Query = ENSP00000423234 (Len=241)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000423234, Len=241):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFD 80
WD40-rpts (_______________WD 1_______________) (_________________WD 2________________)
Query 81 VVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVSS 160
WD40-rpts (__________________WD 3_________________) (___________________WD 4__________
Query 161 DKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDES 240
WD40-rpts _________) (_________________WD 5________________)
Query 241 L 241
WD40-rpts
5 WD40-repeats found in QUERY=ENSP00000423234 (Len=241):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-36 6.56 385.63 0.00040 20.0% 43.32
WD 2: Seg 4 42-80 8.88 481.55 2.0e-05 25.0% 54.41
WD 3: Seg 8 84-124 5.22 330.49 0.00219 25.0% 56.65
WD 4: Seg 12 127-170 8.68 473.20 2.6e-05 30.0% 49.40
WD 5: Seg 16 189-227 8.16 451.74 5.1e-05 27.5% 55.25
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-36 ---MYERS----Y-MHRDVITHVVCTK--TDFIITASHDGHVKFWK
WD 2 42-80 -IEFVKHF----R-SHLGVIESIAVSS-EGALFCSVGDDKAMKVFD
WD 3 84-124 -FDMINML----KLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFI
WD 4 127-170 GRGDNQPLHIFDK-LHTSPLTQIRLNP-VYKAVVSSDKSGMIEYWT
WD 5 189-227 -DTDLYEF----A-KCKAYPTSVCFSP-DGKKIATIGSDRKVRIFR
WD40 Template TGECLRTL----S-GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD