WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422922    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422922 (Len=150)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422922, Len=150):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHEANCSSPGETGEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGH 80  
WD40-rpts                            (____________________WD 1___________________)   (_________

Query       81 TQKITAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGN 150 
WD40-rpts      ___________WD 2____________________)   (_____________WD 3____________)



3 WD40-repeats found in QUERY=ENSP00000422922 (Len=150):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    23-67       7.26  414.62  0.00016       27.5%     52.25
  WD 2:  Seg  7    71-116      8.66  472.54  2.7e-05       37.5%     55.47
  WD 3:  Seg 10   120-150      3.06  241.15  0.03447       12.5%     39.45
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   23-67     EEQTQNPYTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
   WD 2   71-116    -GE------KLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
   WD 3  120-150    -TR------QVQRISCFQSTVKCLTVLQR-------LDVWLSGG--------N

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019