WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422624    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422624 (Len=113)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422624, Len=113):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLTF 80  
WD40-rpts               (___________________WD 1__________________)(______________________WD 2_

Query       81 NPTTEILAIASEKMKEAVRLACCLNRTEAILGF 113 
WD40-rpts      _____________________)           



2 WD40-repeats found in QUERY=ENSP00000422624 (Len=113):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-52       7.53  425.64  0.00011       17.5%     56.77
  WD 2:  Seg  6    53-102      7.05  406.05  0.00021       25.0%     53.06
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   10-52     VNSRKCL--------NRFVDEGSLYGLSIATSRNGQYVACGSN--CGVVNIYN
   WD 2   53-102    QDS---CLQETNPKPIKAIMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLAC

   WD40 Template    TGE---C--------LRTLSGHTSGVTSVSFSPDGKRLVSGSE--DGTIKVWD


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Last modified: 09 Jan 2019