WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422510    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422510 (Len=179)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422510, Len=179):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRWLIGGGREPQGLAETIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQ 80  
WD40-rpts                                 (________________WD 1________________)   (___________

Query       81 KITAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCVWNRKLDLL 160 
WD40-rpts      _________WD 2____________________)   (________________WD 3_______________)      

Query      161 CKTSHLSDTGISALVEIPK 179 
WD40-rpts                         



3 WD40-repeats found in QUERY=ENSP00000422510 (Len=179):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-65       7.46  422.77  0.00012       27.5%     50.36
  WD 2:  Seg  7    69-114      8.69  473.80  2.6e-05       37.5%     55.86
  WD 3:  Seg 11   118-154      7.04  405.28  0.00021       20.0%     50.42
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   28-65     YTELLVLKAHHDIVRFL-VQLD-------DYRFASAGDDGIVVVWN
   WD 2   69-114    GEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWD
   WD 3  118-154    TRQVQRISCFQSTVKCLTVLQR-------LDVWLSGGND--LCVWN

   WD40 Template    GECLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019