WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422316    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422316 (Len=274)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422316, Len=274):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 80  
WD40-rpts      (________WD 1________)   (_________________WD 2________________)    (___________

Query       81 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 160 
WD40-rpts      _______WD 3_________________)   (_________________WD 4________________)   (_____

Query      161 LDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQEYITTTYKLAVEM 240 
WD40-rpts      ___________WD 5_______________)           (_________________WD 6________________

Query      241 RAVSYSLPGVVAHAYWRLRLCLLATRTTWCECGR 274 
WD40-rpts      _)                                



6 WD40-repeats found in QUERY=ENSP00000422316 (Len=274):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-22       3.97  278.47  0.01095       27.5%     23.84
  WD 2:  Seg  3    26-64      10.89  564.54  1.5e-06       50.0%     54.96
  WD 3:  Seg  7    69-109      8.18  452.56  4.9e-05       30.0%     53.69
  WD 4:  Seg 11   113-151     10.02  528.67  4.7e-06       35.0%     52.69
  WD 5:  Seg 15   155-191      6.78  394.78  0.00030       32.5%     54.13
  WD 6:  Seg 20   203-242      8.22  454.26  4.7e-05       12.5%     46.08
Multiple sequence alignment of 6 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-22     ------------------XISSDGQF--ALSGSWDGTLRLWD
   WD 2   26-64     -GTTTRRFVGHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWN
   WD 3   69-109    -CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN
   WD 4  113-151    -CKLKTNHIGHTGYLNTVTVSPDGSL--CASGGKDGQAMLWD
   WD 5  155-191    -GKHLYTLDGG-DIINALCFSPNRYW--LCAAT-GPSIKIWD
   WD 6  203-242    QEVISTSSKAEPPQCTSLAWSADGQE--YITTTYKLAVEMRA

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019