Input parameters:
Query = ENSP00000422316 (Len=274)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000422316, Len=274):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 80
WD40-rpts (________WD 1________) (_________________WD 2________________) (___________
Query 81 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 160
WD40-rpts _______WD 3_________________) (_________________WD 4________________) (_____
Query 161 LDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQEYITTTYKLAVEM 240
WD40-rpts ___________WD 5_______________) (_________________WD 6________________
Query 241 RAVSYSLPGVVAHAYWRLRLCLLATRTTWCECGR 274
WD40-rpts _)
6 WD40-repeats found in QUERY=ENSP00000422316 (Len=274):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-22 3.97 278.47 0.01095 27.5% 23.84
WD 2: Seg 3 26-64 10.89 564.54 1.5e-06 50.0% 54.96
WD 3: Seg 7 69-109 8.18 452.56 4.9e-05 30.0% 53.69
WD 4: Seg 11 113-151 10.02 528.67 4.7e-06 35.0% 52.69
WD 5: Seg 15 155-191 6.78 394.78 0.00030 32.5% 54.13
WD 6: Seg 20 203-242 8.22 454.26 4.7e-05 12.5% 46.08
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-22 ------------------XISSDGQF--ALSGSWDGTLRLWD
WD 2 26-64 -GTTTRRFVGHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWN
WD 3 69-109 -CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN
WD 4 113-151 -CKLKTNHIGHTGYLNTVTVSPDGSL--CASGGKDGQAMLWD
WD 5 155-191 -GKHLYTLDGG-DIINALCFSPNRYW--LCAAT-GPSIKIWD
WD 6 203-242 QEVISTSSKAEPPQCTSLAWSADGQE--YITTTYKLAVEMRA
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD