WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422295    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422295 (Len=877)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422295, Len=877):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHP 80  
WD40-rpts                       (_________________WD 1________________)   (_________________WD 

Query       81 TQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVN 160 
WD40-rpts      2________________)(___________________WD 3___________________)(_________________

Query      161 CIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNY 240 
WD40-rpts      __WD 4___________________)   (_________________WD 5________________)   (________

Query      241 GMERVWCVASLRGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMG 320 
WD40-rpts      _________WD 6________________)                                                  

Query      321 SCEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKEKKSFKPDFG 400 
WD40-rpts                               (__________________WD 7__________________)             

Query      401 AESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQETHEGVTEDG 480 
WD40-rpts                                                                                      

Query      481 IEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIISYSLLV 560 
WD40-rpts                                            (_________________WD 8________________)   

Query      561 SVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQK 640 
WD40-rpts                                                                                      

Query      641 WKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTG 720 
WD40-rpts                                                                                      

Query      721 RLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTP 800 
WD40-rpts                                                                                      

Query      801 NEERNVMEEGKDFQPSRSTAQQELDGKPASPTPVIVASHTANKEEKSLLELEVDLDNLELEDIDTTDINLDEDILDD 877 
WD40-rpts                                                                                   



8 WD40-repeats found in QUERY=ENSP00000422295 (Len=877):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    18-56       6.53  384.27  0.00041       20.0%     55.86
  WD 2:  Seg  7    60-98       7.84  438.56  7.6e-05       22.5%     53.76
  WD 3:  Seg 11    99-142      7.69  432.12  9.3e-05       37.5%     54.58
  WD 4:  Seg 15   143-186      7.98  444.28  6.4e-05       37.5%     50.37
  WD 5:  Seg 19   190-228      9.53  508.43  8.7e-06       40.0%     54.75
  WD 6:  Seg 23   232-270      4.61  305.06  0.00481       20.0%     53.50
  WD 7:  Seg 34   346-387      3.77  270.40  0.01405        5.0%     41.12
  WD 8:  Seg 49   519-557      3.58  262.47  0.01793       20.0%     53.71
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   18-56     -Q--T---LVKTFEVCDLPVRAAKFVA-RKNW--VVTGADDMQIRVFN
   WD 2   60-98     -L--E---RVHMFEAHSDYIRCIAVHP-TQPF--ILTSSDDMLIKLWD
   WD 3   99-142    WD--KKWSCSQVFEGHTHYVMQIVINPKDNNQ--FASASLDRTIKVWQ
   WD 4  143-186    LGSSS---PNFTLEGHEKGVNCIDYYS-GGDKPYLISGADDRLVKIWD
   WD 5  190-228    -K--T---CVQTLEGHAQNVSCASFHP-ELPI--IITGSEDGTVRIWH
   WD 6  232-270    -Y--R---LESTLNYGMERVWCVASLR-GSNN--VALGYDEGSIIVKL
   WD 7  346-387    YIIYT---AMALRNKSFGSAQEFAWAH-DSSE--YAIRESNSIVKIFK
   WD 8  519-557    GG--E----IVTIAHLDRTMYLLGYIP-KDNR--LYLGDKELNIISYS

   WD40 Template    TG--E---CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019