Input parameters:
Query = ENSP00000422243 (Len=327)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000422243, Len=327):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVPAAAMGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTAS 80
WD40-rpts (________________WD 1________________) (_________________WD 2______________
Query 81 VFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160
WD40-rpts __)(____________________WD 3___________________) (________________WD 4________
Query 161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA 240
WD40-rpts ________) (_________________WD 5________________) (_________________WD 6_____
Query 241 TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGNFMRIYRLSPLAVRTSLVISSL 320
WD40-rpts ___________) (_________________WD 7________________)
Query 321 HVTTSPA 327
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000422243 (Len=327):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 3-40 5.43 338.98 0.00168 12.5% 31.35
WD 2: Seg 4 45-83 9.26 497.26 1.2e-05 40.0% 54.61
WD 3: Seg 8 84-128 7.65 430.50 9.8e-05 27.5% 55.10
WD 4: Seg 12 132-169 8.15 451.46 5.1e-05 22.5% 54.42
WD 5: Seg 16 172-210 7.93 442.10 6.8e-05 12.5% 51.86
WD 6: Seg 20 214-252 9.89 523.24 5.5e-06 27.5% 57.07
WD 7: Seg 24 256-294 9.68 514.42 7.2e-06 40.0% 56.65
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 3-40 -----------VPAAAMGPSALGQSGPG-SMAPWCSVSSGPSRYVLGMQE
WD 2 45-83 -HS----KTREFLAHSAKVHSVAWSCDG-RR-----LASGSFDKTASVFL
WD 3 84-128 LEKDRLVKENNYRGHGDSVDQLCWHPSNPDL-----FVTASGDKTIRIWD
WD 4 132-169 -TK----CIATVNTKGENI-NICWSPDG-QT-----IAVGNKDDVVTFID
WD 5 172-210 -TH----RSKAEEQFKFEVNEISWNNDN-NM-----FFLTNGNGCINILS
WD 6 214-252 -LK----PVQSINAHPSNCICIKFDPMG-KY-----FATGSADALVSLWD
WD 7 256-294 -LV----CVRCFSRLDWPVRTLSFSHDG-KM-----LASASEDHFIDIAE
WD40 Template TGE----CLRTLSGHTSGVTSVSFSPDG-KR-----LVSGSEDGTIKVWD