WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422243    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422243 (Len=327)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422243, Len=327):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVPAAAMGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTAS 80  
WD40-rpts        (________________WD 1________________)    (_________________WD 2______________

Query       81 VFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160 
WD40-rpts      __)(____________________WD 3___________________)   (________________WD 4________

Query      161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA 240 
WD40-rpts      ________)  (_________________WD 5________________)   (_________________WD 6_____

Query      241 TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGNFMRIYRLSPLAVRTSLVISSL 320 
WD40-rpts      ___________)   (_________________WD 7________________)                          

Query      321 HVTTSPA 327 
WD40-rpts             



7 WD40-repeats found in QUERY=ENSP00000422243 (Len=327):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-40       5.43  338.98  0.00168       12.5%     31.35
  WD 2:  Seg  4    45-83       9.26  497.26  1.2e-05       40.0%     54.61
  WD 3:  Seg  8    84-128      7.65  430.50  9.8e-05       27.5%     55.10
  WD 4:  Seg 12   132-169      8.15  451.46  5.1e-05       22.5%     54.42
  WD 5:  Seg 16   172-210      7.93  442.10  6.8e-05       12.5%     51.86
  WD 6:  Seg 20   214-252      9.89  523.24  5.5e-06       27.5%     57.07
  WD 7:  Seg 24   256-294      9.68  514.42  7.2e-06       40.0%     56.65
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-40     -----------VPAAAMGPSALGQSGPG-SMAPWCSVSSGPSRYVLGMQE
   WD 2   45-83     -HS----KTREFLAHSAKVHSVAWSCDG-RR-----LASGSFDKTASVFL
   WD 3   84-128    LEKDRLVKENNYRGHGDSVDQLCWHPSNPDL-----FVTASGDKTIRIWD
   WD 4  132-169    -TK----CIATVNTKGENI-NICWSPDG-QT-----IAVGNKDDVVTFID
   WD 5  172-210    -TH----RSKAEEQFKFEVNEISWNNDN-NM-----FFLTNGNGCINILS
   WD 6  214-252    -LK----PVQSINAHPSNCICIKFDPMG-KY-----FATGSADALVSLWD
   WD 7  256-294    -LV----CVRCFSRLDWPVRTLSFSHDG-KM-----LASASEDHFIDIAE

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDG-KR-----LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019