WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422237    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422237 (Len=97)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422237, Len=97):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREERNDILAVADWGQKVSFYQLSGKQIGKDRALNFDPCCISYF 80  
WD40-rpts               (______________________WD 1_____________________)  (________________WD 

Query       81 TKGEYILLGGSDKQVSL 97  
WD40-rpts      2_______________)



2 WD40-repeats found in QUERY=ENSP00000422237 (Len=97):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-58       4.76  311.41  0.00395       12.5%     44.96
  WD 2:  Seg  5    61-97       3.95  277.93  0.01114       12.5%     28.24
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   10-58     NKNGEEKVKIERPGGSLSPIWSICWNPSREERNDILAVADWGQKVSFYQ
   WD 2   61-97     -GK-----QIGKDRALNFDPCCISYFTKGEY----ILLGGSDKQVSL--

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSPDGKR----LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019