WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422224    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422224 (Len=143)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422224, Len=143):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 KIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFV 80  
WD40-rpts      (___________WD 1___________)   (________________WD 2________________)   (_______

Query       81 DEGSLYGLSIATSRNGQYVACGCYFSDLQSYYRNLGNCFRKNERSSQIGSSSFLYSIFKLPSH 143 
WD40-rpts      __________WD 3_________________)                               



3 WD40-repeats found in QUERY=ENSP00000422224 (Len=143):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-28       5.09  324.95  0.00260       20.0%     44.68
  WD 2:  Seg  4    32-69       8.29  457.04  4.3e-05       30.0%     57.05
  WD 3:  Seg  8    73-112      7.00  403.90  0.00022       17.5%     56.53
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-28     -----------K-IVRSFEVSPDGSFLLINGIAGYLHLLA
   WD 2   32-69     KELIGSMKIN-G-RVAASTFSSDSKKVYASSGDGEVYVWD
   WD 3   73-112    RKCLNRFVDEGSLYGLSIATSRNGQYVACGCYFSDLQSYY

   WD40 Template    GECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019