Input parameters:
Query = ENSP00000422224 (Len=143)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000422224, Len=143):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 KIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFV 80
WD40-rpts (___________WD 1___________) (________________WD 2________________) (_______
Query 81 DEGSLYGLSIATSRNGQYVACGCYFSDLQSYYRNLGNCFRKNERSSQIGSSSFLYSIFKLPSH 143
WD40-rpts __________WD 3_________________)
3 WD40-repeats found in QUERY=ENSP00000422224 (Len=143):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-28 5.09 324.95 0.00260 20.0% 44.68
WD 2: Seg 4 32-69 8.29 457.04 4.3e-05 30.0% 57.05
WD 3: Seg 8 73-112 7.00 403.90 0.00022 17.5% 56.53
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-28 -----------K-IVRSFEVSPDGSFLLINGIAGYLHLLA
WD 2 32-69 KELIGSMKIN-G-RVAASTFSSDSKKVYASSGDGEVYVWD
WD 3 73-112 RKCLNRFVDEGSLYGLSIATSRNGQYVACGCYFSDLQSYY
WD40 Template GECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD