WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000422198    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000422198 (Len=116)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000422198, Len=116):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGTLRLWDLTTQGHHHEAICGPYQGCAECGLLL 116 
WD40-rpts      __________)                         



2 WD40-repeats found in QUERY=ENSP00000422198 (Len=116):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.78  477.44  2.3e-05       32.5%     54.36
  WD 2:  Seg  5    53-91      10.04  529.43  4.5e-06       45.0%     54.64
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-44     QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK
   WD 2   53-91     -GIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019