Input parameters:
Query = ENSP00000422029 (Len=237)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000422029, Len=237):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPLHSSLGDRARLHLKKKKSYQDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT 80
WD40-rpts (_________________WD 1________________)
Query 81 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 160
WD40-rpts (_________________WD 2________________) (__________________WD 3______________
Query 161 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA 237
WD40-rpts ___) (_________________WD 4________________)
4 WD40-repeats found in QUERY=ENSP00000422029 (Len=237):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 39-77 10.19 535.62 3.8e-06 45.0% 52.69
WD 2: Seg 8 81-119 11.01 569.64 1.3e-06 50.0% 52.97
WD 3: Seg 12 124-164 8.25 455.31 4.5e-05 30.0% 52.43
WD 4: Seg 16 168-206 9.94 525.14 5.2e-06 35.0% 53.80
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 39-77 GIPQRALRGHSHFVSDVVISSDGQF--ALSGSWDGTLRLWD
WD 2 81-119 GTTTRRFVGHTKDVLSVAFSSDNRQ--IVSGSRDKTIKLWN
WD 3 124-164 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN
WD 4 168-206 CKLKTNHIGHTGYLNTVTVSPDGSL--CASGGKDGQAMLWD
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD