WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000421595    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000421595 (Len=132)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000421595, Len=132):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 YKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLP 80  
WD40-rpts             (____________________WD 1___________________)   (________________________

Query       81 DMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRG 132 
WD40-rpts      _________WD 2________________________________)      



2 WD40-repeats found in QUERY=ENSP00000421595 (Len=132):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-52       6.78  394.91  0.00030       27.5%     44.04
  WD 2:  Seg  5    56-126      3.67  266.46  0.01586       22.5%     42.09
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    8-52     NWEYKTDTDLYEFAKC---------------------------------KAYPTSVCFSPDGKKIATIGSDRKVRIFR
   WD 2   56-126    -GKLMRVFDE-----SLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLG-IKVIN

   WD40 Template    TGECLRTLSG-----H---------------------------------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019