WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000421396    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000421396 (Len=449)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000421396, Len=449):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIPGIGTLTQDTLWCFSQVKGTIEIGTTEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQ 80  
WD40-rpts                          (________________WD 1________________)                      

Query       81 SHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLR 160 
WD40-rpts      (____________________WD 2___________________)                                  (

Query      161 PMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHH 240 
WD40-rpts      _____________________WD 3____________________)            (_________________WD 4

Query      241 CNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENR 320 
WD40-rpts      ________________)                   (________________WD 5________________)      

Query      321 PIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVC 400 
WD40-rpts              (___________________WD 6___________________)   (_________________WD 7___

Query      401 VGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN 449 
WD40-rpts      _____________)                                   



7 WD40-repeats found in QUERY=ENSP00000421396 (Len=449):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-58       7.61  428.96  0.00010       15.0%     40.08
  WD 2:  Seg  6    81-125      4.30  292.41  0.00712       15.0%     43.74
  WD 3:  Seg 12   160-206      5.79  353.78  0.00106       25.0%     49.27
  WD 4:  Seg 17   219-257      6.19  370.47  0.00063       25.0%     38.20
  WD 5:  Seg 21   277-314      6.68  390.68  0.00034       27.5%     40.88
  WD 6:  Seg 25   329-372      5.45  339.86  0.00164       10.0%     43.86
  WD 7:  Seg 28   376-414      4.43  297.48  0.00608        7.5%     24.32
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   21-58     --GTIEI--------G---TTEAD----IISTVEFNH--TGELLATGDKGGRVVIFQ
   WD 2   81-125    SHEPEFD--------YLKSLEIEE----KINKIRWLPQQNAAYFLLSTNDKTVKLWK
   WD 3  160-206    RPMDLMVEATPRRVFA---NAHTY----HINSISVNS--DYETYMS-ADDLRINLWN
   WD 4  219-257    IKP--AN--------M---EELTE----VITAAEFHP-HHCNTFVYSSSKGTIRLCD
   WD 5  277-314    -PSNRSF--------F---SEIIS----SISDVKFSH--SGRYIMTRD-YLTVKVWD
   WD 6  329-372    DYLRSKL--------C---SLYENDCIFDKFECVWNG--SDSVIMTGSYNNFFRMFD
   WD 7  376-414    -KRDVTL--------E---ASREN----SKPRAILKP--RKVCVGGKRRKDEISVDS

   WD40 Template    TGECLRT--------L---SGHTS----GVTSVSFSP--DGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019