Input parameters:
Query = ENSP00000421396 (Len=449)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000421396, Len=449):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MIPGIGTLTQDTLWCFSQVKGTIEIGTTEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQ 80
WD40-rpts (________________WD 1________________)
Query 81 SHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLR 160
WD40-rpts (____________________WD 2___________________) (
Query 161 PMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHH 240
WD40-rpts _____________________WD 3____________________) (_________________WD 4
Query 241 CNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENR 320
WD40-rpts ________________) (________________WD 5________________)
Query 321 PIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVC 400
WD40-rpts (___________________WD 6___________________) (_________________WD 7___
Query 401 VGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN 449
WD40-rpts _____________)
7 WD40-repeats found in QUERY=ENSP00000421396 (Len=449):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 21-58 7.61 428.96 0.00010 15.0% 40.08
WD 2: Seg 6 81-125 4.30 292.41 0.00712 15.0% 43.74
WD 3: Seg 12 160-206 5.79 353.78 0.00106 25.0% 49.27
WD 4: Seg 17 219-257 6.19 370.47 0.00063 25.0% 38.20
WD 5: Seg 21 277-314 6.68 390.68 0.00034 27.5% 40.88
WD 6: Seg 25 329-372 5.45 339.86 0.00164 10.0% 43.86
WD 7: Seg 28 376-414 4.43 297.48 0.00608 7.5% 24.32
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-58 --GTIEI--------G---TTEAD----IISTVEFNH--TGELLATGDKGGRVVIFQ
WD 2 81-125 SHEPEFD--------YLKSLEIEE----KINKIRWLPQQNAAYFLLSTNDKTVKLWK
WD 3 160-206 RPMDLMVEATPRRVFA---NAHTY----HINSISVNS--DYETYMS-ADDLRINLWN
WD 4 219-257 IKP--AN--------M---EELTE----VITAAEFHP-HHCNTFVYSSSKGTIRLCD
WD 5 277-314 -PSNRSF--------F---SEIIS----SISDVKFSH--SGRYIMTRD-YLTVKVWD
WD 6 329-372 DYLRSKL--------C---SLYENDCIFDKFECVWNG--SDSVIMTGSYNNFFRMFD
WD 7 376-414 -KRDVTL--------E---ASREN----SKPRAILKP--RKVCVGGKRRKDEISVDS
WD40 Template TGECLRT--------L---SGHTS----GVTSVSFSP--DGKRLVSGSEDGTIKVWD