Input parameters:
Query = ENSP00000421356 (Len=198)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000421356, Len=198):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRVWPGAYGPGGAVMTPTCHLSVGAEIQRLFLSCRPAQGSWGDKTI 80
WD40-rpts (_______________WD 1_______________) (________________WD 2____________
Query 81 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 160
WD40-rpts ___) (_________________WD 3________________) (_________________WD 4____
Query 161 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 198
WD40-rpts ____________)
4 WD40-repeats found in QUERY=ENSP00000421356 (Len=198):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 4-39 6.70 391.38 0.00033 22.5% 38.41
WD 2: Seg 4 48-84 7.05 405.91 0.00021 25.0% 47.67
WD 3: Seg 7 93-131 10.26 538.36 3.4e-06 45.0% 48.12
WD 4: Seg 11 135-173 10.98 568.35 1.4e-06 50.0% 51.71
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 4-39 QMTLRGTLKGHNGWVTQIATTPQFPDMILSA-----SRVWP
WD 2 48-84 ----VMTPTCHLSVGAEIQRLFLSCRPAQGSWGDKTIIMWK
WD 3 93-131 -GIPQRALRGHSHFVSDVVISSDGQFALSGS-WDGTLRLWD
WD 4 135-173 -GTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-RDKTIKLWN
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS-EDGTIKVWD