WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000421356    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000421356 (Len=198)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000421356, Len=198):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRVWPGAYGPGGAVMTPTCHLSVGAEIQRLFLSCRPAQGSWGDKTI 80  
WD40-rpts         (_______________WD 1_______________)        (________________WD 2____________

Query       81 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 160 
WD40-rpts      ___)        (_________________WD 3________________)   (_________________WD 4____

Query      161 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 198 
WD40-rpts      ____________)                         



4 WD40-repeats found in QUERY=ENSP00000421356 (Len=198):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-39       6.70  391.38  0.00033       22.5%     38.41
  WD 2:  Seg  4    48-84       7.05  405.91  0.00021       25.0%     47.67
  WD 3:  Seg  7    93-131     10.26  538.36  3.4e-06       45.0%     48.12
  WD 4:  Seg 11   135-173     10.98  568.35  1.4e-06       50.0%     51.71
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    4-39     QMTLRGTLKGHNGWVTQIATTPQFPDMILSA-----SRVWP
   WD 2   48-84     ----VMTPTCHLSVGAEIQRLFLSCRPAQGSWGDKTIIMWK
   WD 3   93-131    -GIPQRALRGHSHFVSDVVISSDGQFALSGS-WDGTLRLWD
   WD 4  135-173    -GTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-RDKTIKLWN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS-EDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019