Input parameters:
Query = ENSP00000421140 (Len=110)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000421140, Len=110):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVHNDAIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSK 80
WD40-rpts (__________WD 1__________) (___________________WD 2__________________)(_______
Query 81 HKSSSKIICCSWTNDGQYLALGMFNGIISI 110
WD40-rpts _________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000421140 (Len=110):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-26 3.94 277.46 0.01130 17.5% 38.70
WD 2: Seg 4 30-72 6.71 391.89 0.00033 30.0% 56.17
WD 3: Seg 8 73-110 7.04 405.39 0.00021 20.0% 46.81
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-26 ------------------XINDIAFKPDGTQLILAAGS-RLLVYD
WD 2 30-72 -GTLLQPLKGHKDTVHNDAIQCVSYNPITHQLASCSSS-DFGLWS
WD 3 73-110 PEQKSVSKHKS-----SSKIICCSWTNDGQYLALGMFNGIISI--
WD40 Template TGECLRTLSGH-----TSGVTSVSFSPDGKRLVSGSEDGTIKVWD