WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000420493    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000420493 (Len=158)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000420493, Len=158):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNT 80  
WD40-rpts                       (________________WD 1________________)(______________________WD

Query       81 VLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFSGCLCSRK 158 
WD40-rpts       2______________________)   (________________WD 3________________)            



3 WD40-repeats found in QUERY=ENSP00000420493 (Len=158):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-55       4.64  306.36  0.00462       15.0%     41.57
  WD 2:  Seg  5    56-105      4.43  297.73  0.00604       15.0%     40.10
  WD 3:  Seg  9   109-146      4.78  311.94  0.00389       15.0%     51.18
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   18-55     -TESTVFPRESGKNCKVCIFSKDGTLFA----------WGN-GEKVNIIS
   WD 2   56-105    VTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYD
   WD 3  109-146    -GTCLKSFIQKKMQNWCPSWSEDETLCA----------RNV-NNEVHFFE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV----------SGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019