Input parameters:
Query = ENSP00000420493 (Len=158)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000420493, Len=158):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNT 80
WD40-rpts (________________WD 1________________)(______________________WD
Query 81 VLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFSGCLCSRK 158
WD40-rpts 2______________________) (________________WD 3________________)
3 WD40-repeats found in QUERY=ENSP00000420493 (Len=158):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 18-55 4.64 306.36 0.00462 15.0% 41.57
WD 2: Seg 5 56-105 4.43 297.73 0.00604 15.0% 40.10
WD 3: Seg 9 109-146 4.78 311.94 0.00389 15.0% 51.18
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 18-55 -TESTVFPRESGKNCKVCIFSKDGTLFA----------WGN-GEKVNIIS
WD 2 56-105 VTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYD
WD 3 109-146 -GTCLKSFIQKKMQNWCPSWSEDETLCA----------RNV-NNEVHFFE
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLV----------SGSEDGTIKVWD