WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000420167    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000420167 (Len=1129)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000420167, Len=1129):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGGAGSGSVHPAGTAGVLREEIQETLTSEYFQICKTVRHGFPHQPTALAFDP 80  
WD40-rpts                                                                 (_________________WD 

Query       81 VQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITY 160 
WD40-rpts      1________________)  (_________________WD 2________________)     (_______________

Query      161 CHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKS 240 
WD40-rpts      __WD 3________________)             (__________________WD 4_________________)  (

Query      241 KRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTIPHGKSQREGRKSESCKPILKVEYKTCKNSE 320 
WD40-rpts      _________________WD 5________________)                                          

Query      321 PFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPIFE 400 
WD40-rpts                                                                                      

Query      401 NPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIITGHADGSIKFWDASA 480 
WD40-rpts                                     (____________________WD 6____________________)   

Query      481 ITLQMLYKLKTSKVFEKQKVGEGKQTCEIVEEDPFAIQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITTEIVSLEVRLQ 560 
WD40-rpts                       (____________________WD 7___________________)                  

Query      561 YDVEDIITPEPETSPPFPDLSAQLPSSRSLSGSTNTVASEGVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQ 640 
WD40-rpts                                                                                      

Query      641 QITSLAVSSAYGIVAFGNCNGLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQFIADNFCMRGLSNFYPDLTK 720 
WD40-rpts                                                                                      

Query      721 RIRTSYQSLTELNDSPVPLELERCKSPTSENRENSYNRSRSSSISSIDKDSKEAITALYFMDSFARKNDSTISPCLFVGT 800 
WD40-rpts                                                                                      

Query      801 SLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDRMGGLMQPPYEVWRDPNNIDENEKSWRRKVVMNS 880 
WD40-rpts                                                                                      

Query      881 SSASQEIGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQANVVVMCSSACLACFCANGHIMIMSLPSLRPMLDV 960 
WD40-rpts                                                                                      

Query      961 NYLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNLQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDRE 1040
WD40-rpts                                                                                      

Query     1041 ELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLK 1120
WD40-rpts                                                                                      

Query     1121 YKDKKWYQF 1129
WD40-rpts               



7 WD40-repeats found in QUERY=ENSP00000420167 (Len=1129):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    60-98       6.49  382.79  0.00043       25.0%     43.78
  WD 2:  Seg  5   101-139      6.76  393.86  0.00031       25.0%     56.63
  WD 3:  Seg  9   145-183      5.77  352.90  0.00109       20.0%     55.14
  WD 4:  Seg 14   197-237      7.21  412.58  0.00017       32.5%     48.72
  WD 5:  Seg 18   240-278      6.76  394.07  0.00030       15.0%     56.93
  WD 6:  Seg 31   432-477      5.59  345.66  0.00137       22.5%     33.07
  WD 7:  Seg 36   498-542      4.02  280.65  0.01024        2.5%     50.57
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   60-98     -Q-----ICKTVRH------GFPHQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 2  101-139    -G-----VDCYCQH------ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 3  145-183    -P-----AILHSLK------FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 4  197-237    NK-----AIELSTK------THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 5  240-278    -S-----KRAELRV------YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 6  432-477    IG-----VKHKKQGYSNKEWPISGGAWNLGAQT-YPEIIITGHADGSIKFWD
   WD 7  498-542    QKVGEGKQTCEIVE------EDPFAIQMIYWCP-ESRIFCVSGVSAYVIIYK

   WD40 Template    TG-----ECLRTLS------GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019