Input parameters:
Query = ENSP00000420167 (Len=1129)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000420167, Len=1129):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGGAGSGSVHPAGTAGVLREEIQETLTSEYFQICKTVRHGFPHQPTALAFDP 80
WD40-rpts (_________________WD
Query 81 VQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITY 160
WD40-rpts 1________________) (_________________WD 2________________) (_______________
Query 161 CHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKS 240
WD40-rpts __WD 3________________) (__________________WD 4_________________) (
Query 241 KRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTIPHGKSQREGRKSESCKPILKVEYKTCKNSE 320
WD40-rpts _________________WD 5________________)
Query 321 PFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPIFE 400
WD40-rpts
Query 401 NPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIITGHADGSIKFWDASA 480
WD40-rpts (____________________WD 6____________________)
Query 481 ITLQMLYKLKTSKVFEKQKVGEGKQTCEIVEEDPFAIQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITTEIVSLEVRLQ 560
WD40-rpts (____________________WD 7___________________)
Query 561 YDVEDIITPEPETSPPFPDLSAQLPSSRSLSGSTNTVASEGVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQ 640
WD40-rpts
Query 641 QITSLAVSSAYGIVAFGNCNGLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQFIADNFCMRGLSNFYPDLTK 720
WD40-rpts
Query 721 RIRTSYQSLTELNDSPVPLELERCKSPTSENRENSYNRSRSSSISSIDKDSKEAITALYFMDSFARKNDSTISPCLFVGT 800
WD40-rpts
Query 801 SLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDRMGGLMQPPYEVWRDPNNIDENEKSWRRKVVMNS 880
WD40-rpts
Query 881 SSASQEIGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQANVVVMCSSACLACFCANGHIMIMSLPSLRPMLDV 960
WD40-rpts
Query 961 NYLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNLQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDRE 1040
WD40-rpts
Query 1041 ELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLK 1120
WD40-rpts
Query 1121 YKDKKWYQF 1129
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000420167 (Len=1129):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 60-98 6.49 382.79 0.00043 25.0% 43.78
WD 2: Seg 5 101-139 6.76 393.86 0.00031 25.0% 56.63
WD 3: Seg 9 145-183 5.77 352.90 0.00109 20.0% 55.14
WD 4: Seg 14 197-237 7.21 412.58 0.00017 32.5% 48.72
WD 5: Seg 18 240-278 6.76 394.07 0.00030 15.0% 56.93
WD 6: Seg 31 432-477 5.59 345.66 0.00137 22.5% 33.07
WD 7: Seg 36 498-542 4.02 280.65 0.01024 2.5% 50.57
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 60-98 -Q-----ICKTVRH------GFPHQPTALAFDP-VQKILAIGTRTGAIRILG
WD 2 101-139 -G-----VDCYCQH------ESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
WD 3 145-183 -P-----AILHSLK------FNRERITYCHLPF-QSKWLYVGTERGNTHIVN
WD 4 197-237 NK-----AIELSTK------THPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
WD 5 240-278 -S-----KRAELRV------YYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
WD 6 432-477 IG-----VKHKKQGYSNKEWPISGGAWNLGAQT-YPEIIITGHADGSIKFWD
WD 7 498-542 QKVGEGKQTCEIVE------EDPFAIQMIYWCP-ESRIFCVSGVSAYVIIYK
WD40 Template TG-----ECLRTLS------GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD