WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000419897    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000419897 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000419897, Len=325):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKI 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 VIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDI 160 
WD40-rpts                  (____________________WD 2____________________)        (_____________

Query      161 ACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRS 240 
WD40-rpts      ____WD 3_________________)(___________________WD 4___________________)          

Query      241 ALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDIC 320 
WD40-rpts                                                                                      

Query      321 DDDDF 325 
WD40-rpts           



4 WD40-repeats found in QUERY=ENSP00000419897 (Len=325):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       3.59  262.92  0.01769       20.0%     40.65
  WD 2:  Seg  9    93-138      3.52  260.24  0.01921       22.5%     37.03
  WD 3:  Seg 13   147-186      6.76  394.02  0.00030       30.0%     50.39
  WD 4:  Seg 17   187-230      5.75  352.22  0.00111       20.0%     50.89
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-33     ------MT-----QQPL----RGVTSLRFNQDQSCFC-CAMETG--VRIYN
   WD 2   93-138    FPDNPRKLFEFDTRDNP----KGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
   WD 3  147-186    -SSAPFTI-----NAHQ----SDIACVSLNQPGTVVA-SASQKGTLIRLFD
   WD 4  187-230    TQSKEKLV-----ELRRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIFA

   WD40 Template    TGECLRTL-----SGHT----SGVTSVSFSPDGKRLV-SGSEDGT-IKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019