Input parameters:
Query = ENSP00000419897 (Len=325)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000419897, Len=325):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTQQPLRGVTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKI 80
WD40-rpts (______________WD 1_____________)
Query 81 VIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDI 160
WD40-rpts (____________________WD 2____________________) (_____________
Query 161 ACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRS 240
WD40-rpts ____WD 3_________________)(___________________WD 4___________________)
Query 241 ALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDIC 320
WD40-rpts
Query 321 DDDDF 325
WD40-rpts
4 WD40-repeats found in QUERY=ENSP00000419897 (Len=325):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-33 3.59 262.92 0.01769 20.0% 40.65
WD 2: Seg 9 93-138 3.52 260.24 0.01921 22.5% 37.03
WD 3: Seg 13 147-186 6.76 394.02 0.00030 30.0% 50.39
WD 4: Seg 17 187-230 5.75 352.22 0.00111 20.0% 50.89
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-33 ------MT-----QQPL----RGVTSLRFNQDQSCFC-CAMETG--VRIYN
WD 2 93-138 FPDNPRKLFEFDTRDNP----KGLCDLCPSLEKQLLVFPGHKCGS-LQLVD
WD 3 147-186 -SSAPFTI-----NAHQ----SDIACVSLNQPGTVVA-SASQKGTLIRLFD
WD 4 187-230 TQSKEKLV-----ELRRGTDPATLYCINFSHDSSFLC-ASSDKGT-VHIFA
WD40 Template TGECLRTL-----SGHT----SGVTSVSFSPDGKRLV-SGSEDGT-IKVWD