WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000419627    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000419627 (Len=1002)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000419627, Len=1002):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGGAGSGSVHPAGTAGVLREEIQETLTSEYFQICKTVRHGFPHQPTALAFDP 80  
WD40-rpts                                                                     (_______________W

Query       81 VQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITY 160 
WD40-rpts      D 1______________)  (_________________WD 2________________)     (_______________

Query      161 CHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKS 240 
WD40-rpts      __WD 3________________)             (__________________WD 4_________________)  (

Query      241 KRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTIPHGKSQREGRKSESCKPILKVEYKTCKNSE 320 
WD40-rpts      _________________WD 5________________)                                          

Query      321 PFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPIFE 400 
WD40-rpts                                                                                      

Query      401 NPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIITGHADGSIKFWDASA 480 
WD40-rpts                                            (_________________WD 6________________)   

Query      481 ITLQMLYKLKTSKVFEKQKVGEGKQTCEIVEEDPFAIQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITTEIVSLEVRLQ 560 
WD40-rpts                       (____________________WD 7___________________)                  

Query      561 YDVEDIITPEPETSPPFPDLSAQLPSSRSLSGSTNTVASEGVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQ 640 
WD40-rpts                             (_________________WD 8________________)           (______

Query      641 QITSLAVSSAYGIVAFGNCNGLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQFIAGLTELNDSPVPLELERC 720 
WD40-rpts      ________WD 9_____________)                                                      

Query      721 KSPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEENRENSYNRSRSSSISSI 800 
WD40-rpts                                                                                      

Query      801 DKDSKEAITALYFMDSFARKNDSTISPCLFVGTSLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDR 880 
WD40-rpts                                                                                      

Query      881 MGGLMQPPYEVWRDPNNIDENEKSWRRKVVMNSSSASQEIGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQAN 960 
WD40-rpts                                                                                      

Query      961 VVVMCSSACLACFCANGHIMIMRYLPSYKLSGNHNNTSKVQS 1002
WD40-rpts                                                



9 WD40-repeats found in QUERY=ENSP00000419627 (Len=1002):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    64-98       6.38  378.21  0.00050       25.0%     45.36
  WD 2:  Seg  5   101-139      7.33  417.26  0.00015       25.0%     56.04
  WD 3:  Seg  9   145-183      6.42  379.81  0.00047       20.0%     55.43
  WD 4:  Seg 14   197-237      7.77  435.67  8.4e-05       32.5%     48.30
  WD 5:  Seg 18   240-278      7.31  416.83  0.00015       15.0%     56.39
  WD 6:  Seg 34   439-477      6.19  370.20  0.00064       22.5%     26.38
  WD 7:  Seg 38   498-542      4.87  315.81  0.00345        2.5%     50.64
  WD 8:  Seg 43   584-622      3.23  248.04  0.02792       20.0%      1.68
  WD 9:  Seg 45   634-666      2.87  233.14  0.04399       17.5%     38.69
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   64-98     T----------VRHGFPHQPTALAFDP-VQKILAIGTRTGAIRILG
   WD 2  101-139    -G-----VDCYCQHESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
   WD 3  145-183    -P-----AILHSLKFNRERITYCHLPF-QSKWLYVGTERGNTHIVN
   WD 4  197-237    NK-----AIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
   WD 5  240-278    -S-----KRAELRVYYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
   WD 6  439-477    QG-----YSNKEWP-ISGGAWNLGAQT-YPEIIITGHADGSIKFWD
   WD 7  498-542    QKVGEGKQTCEIVEEDPFAIQMIYWCP-ESRIFCVSGVSAYVIIYK
   WD 8  584-622    -L-----PSSRSLSGSTNTVASEGVTK-DSIPCLNVKTRPVRMPPG
   WD 9  634-666    -----------VDGEPPQQITSLAVSS-AYGIVAFGNCNG-LAVVD

   WD40 Template    TG-----ECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019