Input parameters:
Query = ENSP00000419627 (Len=1002)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000419627, Len=1002):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKFNFRKVLDGLTASSPGSGSSSGSNSGGGAGSGSVHPAGTAGVLREEIQETLTSEYFQICKTVRHGFPHQPTALAFDP 80
WD40-rpts (_______________W
Query 81 VQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITY 160
WD40-rpts D 1______________) (_________________WD 2________________) (_______________
Query 161 CHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKS 240
WD40-rpts __WD 3________________) (__________________WD 4_________________) (
Query 241 KRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTIPHGKSQREGRKSESCKPILKVEYKTCKNSE 320
WD40-rpts _________________WD 5________________)
Query 321 PFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPIFE 400
WD40-rpts
Query 401 NPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIITGHADGSIKFWDASA 480
WD40-rpts (_________________WD 6________________)
Query 481 ITLQMLYKLKTSKVFEKQKVGEGKQTCEIVEEDPFAIQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITTEIVSLEVRLQ 560
WD40-rpts (____________________WD 7___________________)
Query 561 YDVEDIITPEPETSPPFPDLSAQLPSSRSLSGSTNTVASEGVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQ 640
WD40-rpts (_________________WD 8________________) (______
Query 641 QITSLAVSSAYGIVAFGNCNGLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQFIAGLTELNDSPVPLELERC 720
WD40-rpts ________WD 9_____________)
Query 721 KSPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEENRENSYNRSRSSSISSI 800
WD40-rpts
Query 801 DKDSKEAITALYFMDSFARKNDSTISPCLFVGTSLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDR 880
WD40-rpts
Query 881 MGGLMQPPYEVWRDPNNIDENEKSWRRKVVMNSSSASQEIGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQAN 960
WD40-rpts
Query 961 VVVMCSSACLACFCANGHIMIMRYLPSYKLSGNHNNTSKVQS 1002
WD40-rpts
9 WD40-repeats found in QUERY=ENSP00000419627 (Len=1002):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 64-98 6.38 378.21 0.00050 25.0% 45.36
WD 2: Seg 5 101-139 7.33 417.26 0.00015 25.0% 56.04
WD 3: Seg 9 145-183 6.42 379.81 0.00047 20.0% 55.43
WD 4: Seg 14 197-237 7.77 435.67 8.4e-05 32.5% 48.30
WD 5: Seg 18 240-278 7.31 416.83 0.00015 15.0% 56.39
WD 6: Seg 34 439-477 6.19 370.20 0.00064 22.5% 26.38
WD 7: Seg 38 498-542 4.87 315.81 0.00345 2.5% 50.64
WD 8: Seg 43 584-622 3.23 248.04 0.02792 20.0% 1.68
WD 9: Seg 45 634-666 2.87 233.14 0.04399 17.5% 38.69
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 64-98 T----------VRHGFPHQPTALAFDP-VQKILAIGTRTGAIRILG
WD 2 101-139 -G-----VDCYCQHESGAAVLQLQFLI-NEGALVSASSDDTLHLWN
WD 3 145-183 -P-----AILHSLKFNRERITYCHLPF-QSKWLYVGTERGNTHIVN
WD 4 197-237 NK-----AIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWD
WD 5 240-278 -S-----KRAELRVYYDEAIHSIDWHH-EGKQFMCSHSDGSLTLWN
WD 6 439-477 QG-----YSNKEWP-ISGGAWNLGAQT-YPEIIITGHADGSIKFWD
WD 7 498-542 QKVGEGKQTCEIVEEDPFAIQMIYWCP-ESRIFCVSGVSAYVIIYK
WD 8 584-622 -L-----PSSRSLSGSTNTVASEGVTK-DSIPCLNVKTRPVRMPPG
WD 9 634-666 -----------VDGEPPQQITSLAVSS-AYGIVAFGNCNG-LAVVD
WD40 Template TG-----ECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD