WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000419246    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000419246 (Len=141)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000419246, Len=141):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLLRCQLKQAPPQKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMV 80  
WD40-rpts                              (_________________WD 1________________)    (____________

Query       81 VTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSED 141 
WD40-rpts      _____WD 2________________)   (_____________WD 3_____________)



3 WD40-repeats found in QUERY=ENSP00000419246 (Len=141):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-63       9.87  522.53  5.6e-06       27.5%     55.14
  WD 2:  Seg  7    68-106     10.17  534.78  3.9e-06       37.5%     54.60
  WD 3:  Seg 10   110-141      4.50  300.51  0.00554       20.0%     42.11
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   25-63     GNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWD
   WD 2   68-106    SQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD
   WD 3  110-141    GQSVERASVSRNVVTHLCWVPREPYILQTSED-------

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019