WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000418968    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000418968 (Len=369)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000418968, Len=369):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSF 80  
WD40-rpts                  (_________________WD 1________________)   (_________________WD 2____

Query       81 VTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPS 160 
WD40-rpts      ____________)   (_________________WD 3________________)   (_________________WD 4

Query      161 GTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVA 240 
WD40-rpts      ________________)   (_________________WD 5________________)   (_________________

Query      241 FSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQT 320 
WD40-rpts      WD 6________________)        (_________________WD 7________________)   (________

Query      321 LTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQCLENQQLIMQRATP 369 
WD40-rpts      _________WD 8________________)                   



8 WD40-repeats found in QUERY=ENSP00000418968 (Len=369):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-51      10.09  531.58  4.3e-06       40.0%     53.13
  WD 2:  Seg  6    55-93       9.77  518.11  6.5e-06       37.5%     56.65
  WD 3:  Seg 10    97-135     10.55  550.27  2.4e-06       45.0%     55.31
  WD 4:  Seg 14   139-177     10.06  530.29  4.4e-06       37.5%     55.62
  WD 5:  Seg 18   181-219      9.77  518.06  6.5e-06       32.5%     57.02
  WD 6:  Seg 22   223-261     10.08  530.87  4.3e-06       40.0%     55.04
  WD 7:  Seg 26   270-308      7.68  431.97  9.4e-05       12.5%     44.83
  WD 8:  Seg 29   312-350      7.42  421.21  0.00013       10.0%     47.53
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   13-51     QSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWV
   WD 2   55-93     KGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWA
   WD 3   97-135    QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD
   WD 4  139-177    RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD
   WD 5  181-219    HRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILD
   WD 6  223-261    GRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK
   WD 7  270-308    GEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQ
   WD 8  312-350    QEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019