Input parameters:
Query = ENSP00000418968 (Len=369)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000418968, Len=369):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSF 80
WD40-rpts (_________________WD 1________________) (_________________WD 2____
Query 81 VTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPS 160
WD40-rpts ____________) (_________________WD 3________________) (_________________WD 4
Query 161 GTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVA 240
WD40-rpts ________________) (_________________WD 5________________) (_________________
Query 241 FSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQT 320
WD40-rpts WD 6________________) (_________________WD 7________________) (________
Query 321 LTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQCLENQQLIMQRATP 369
WD40-rpts _________WD 8________________)
8 WD40-repeats found in QUERY=ENSP00000418968 (Len=369):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 13-51 10.09 531.58 4.3e-06 40.0% 53.13
WD 2: Seg 6 55-93 9.77 518.11 6.5e-06 37.5% 56.65
WD 3: Seg 10 97-135 10.55 550.27 2.4e-06 45.0% 55.31
WD 4: Seg 14 139-177 10.06 530.29 4.4e-06 37.5% 55.62
WD 5: Seg 18 181-219 9.77 518.06 6.5e-06 32.5% 57.02
WD 6: Seg 22 223-261 10.08 530.87 4.3e-06 40.0% 55.04
WD 7: Seg 26 270-308 7.68 431.97 9.4e-05 12.5% 44.83
WD 8: Seg 29 312-350 7.42 421.21 0.00013 10.0% 47.53
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 13-51 QSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWV
WD 2 55-93 KGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWA
WD 3 97-135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD
WD 4 139-177 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD
WD 5 181-219 HRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILD
WD 6 223-261 GRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK
WD 7 270-308 GEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQ
WD 8 312-350 QEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTE
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD