Input parameters:
Query = ENSP00000418698 (Len=237)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000418698, Len=237):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVC 80
WD40-rpts (________________WD 1________________)(________________
Query 81 LEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFIG 160
WD40-rpts ______WD 2______________________) (________________WD 3________________)
Query 161 SRVSASGSFLDTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVT 237
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000418698 (Len=237):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 26-63 4.13 285.16 0.00891 15.0% 44.23
WD 2: Seg 6 64-113 4.46 298.97 0.00581 15.0% 44.63
WD 3: Seg 10 117-154 4.52 301.21 0.00542 15.0% 48.06
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 26-63 -TESTVFPRESGKNCKVCIFSKDGTLFAW----------GN-GEKVNIIS
WD 2 64-113 VTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYD
WD 3 117-154 -GTCLKSFIQKKMQNWCPSWSEDETLCAR----------NVNN-EVHFFE
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVS----------GSEDGTIKVWD